fgenesh1_pg.C_scaffold_10000074 (Cryphonectria parasitica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.C_scaffold_10000074 T335225_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.425 0.261
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.425 0.261
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.419 0.261
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_10000074 Sox 541 586

Links

Other Sox family TFs
Other Cryphonectria parasitica TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLRG_05645 Colletotrichum graminicola GLRG_05645 N 0.608
THITE_22048 Thielavia terrestris THITE_22048 I 0.586
MYCTH_2308522 Myceliophthora thermophila MYCTH_2308522 I 0.579
CSUB01_02862 Colletotrichum sublineola CSUB01_02862 N 0.565
ACRE_034400 Acremonium chrysogenum ACRE_034400 N 0.564
S40285_07156 Stachybotrys chlorohalonata S40285_07156 N 0.562
S40288_05696 Stachybotrys chartarum S40288_05696 N 0.562
CH063_08320 Colletotrichum higginsianum CH063_08320 N 0.550
BBA_10208 Beauveria bassiana BBA_10208 N 0.546
TRIVIDRAFT_16124 Trichoderma virens TRIVIDRAFT_16124 N 0.541
Cob_07971 Colletotrichum orbiculare Cob_07971 N 0.507
TRIATDRAFT_37227 Trichoderma atroviride TRIATDRAFT_37227 N 0.507
VHEMI02919 Torrubiella hemipterigena VHEMI02919 N 0.505
CGGC5_1942 Colletotrichum gloeosporioides CGGC5_1942 N 0.503
MBM_07425 Marssonina brunnea MBM_07425 N 0.501
MAPG_04417 Magnaporthe poae MAPG_04417 N 0.499
MGG_00866 Magnaporthe oryzae MGG_00866 N 0.493
OCS_03846 Ophiocordyceps sinensis OCS_03846 N 0.492
Bcin02g06030 Botrytis cinerea Bcin02g06030 N 0.478
SS1G_11040 Sclerotinia sclerotiorum SS1G_11040 N 0.477
GSTUM_00007488001 Tuber melanosporum GSTUM_00007488001 N 0.472
NCU06874 Neurospora crassa NCU06874 N 0.472
CFIO01_04039 Colletotrichum fioriniae CFIO01_04039 N 0.469
EV44_g2732 Erysiphe necator EV44_g2732 N 0.469
UV8b_7580 Ustilaginoidea virens UV8b_7580 N 0.469
PODANS_5_8400 Podospora anserina PODANS_5_8400 N 0.466
e_gw1.8.519.1 Neurospora discreta e_gw1.8.519.1 N 0.462
Ca_12379 Cicer arietinum Ca_12379 I 0.460
PGSC0003DMG400028360 Solanum tuberosum PGSC0003DMG400028360 I 0.458
Solyc05g012050.2 Solanum lycopersicum Solyc05g012050.2 I 0.458
CMQ_1415 Grosmannia clavigera CMQ_1415 N 0.457
OIDMADRAFT_54116 Oidiodendron maius OIDMADRAFT_54116 N 0.457
GGTG_05735 Gaeumannomyces graminis GGTG_05735 N 0.454
AMTR_s00047p00199030 Amborella trichopoda AMTR_s00047p00199030 I 0.453
GLYMA01G08030 Glycine max GLYMA01G08030 I 0.453
GLYMA02G13350 Glycine max GLYMA02G13350 I 0.453
MAC_01687 Metarhizium acridum MAC_01687 I 0.453
POPTR_0010s16410 Populus trichocarpa POPTR_0010s16410 I 0.453
PRUPE_ppa014900mg Prunus persica PRUPE_ppa014900mg I 0.453
TCM_011484 Theobroma cacao TCM_011484 I 0.453
CRC Vitis vinifera VIT_01s0011g00140 I 0.453
Ca_18533 Cicer arietinum Ca_18533 I 0.453
Cla010397 Citrullus lanatus Cla010397 I 0.453
Pm030598 Prunus mume Pm030598 I 0.453
30174.m009083 Ricinus communis 30174.m009083 I 0.453
cassava10710.m1 Manihot esculenta cassava10710.m1 I 0.453
cassava39135.m1 Manihot esculenta cassava39135.m1 I 0.453
Cucsa.284430 Cucumis sativus Cucsa.284430 I 0.453
mgf007067m Mimulus guttatus mgf007067m I 0.453
Eucgr.B03140 Eucalyptus grandis Eucgr.B03140 I 0.453
evm.TU.contig_30608 Carica papaya evm.TU.contig_30608 I 0.453
gene04566-v1.0-hybrid Fragaria vesca gene04566-v1.0-hybrid I 0.453
Gorai.005G146700 Gossypium raimondii Gorai.005G146700 I 0.453
Lus10036811.g Linum usitatissimum Lus10036811.g I 0.453
SapurV1A.0072s0330 Salix purpurea SapurV1A.0072s0330 I 0.453
PK13838.1 Cannabis sativa PK13838.1 I 0.453
SERLA73DRAFT_131740 Serpula lacrymans SERLA73DRAFT_131740 I 0.451
NEUTE1DRAFT_130971 Neurospora tetrasperma NEUTE1DRAFT_130971 N 0.448
PV09_07652 Verruconis gallopava PV09_07652 I 0.446
SBOR_2840 Sclerotinia borealis SBOR_2840 N 0.446
M407DRAFT_16670 Tulasnella calospora M407DRAFT_16670 N 0.441
MAJ_02341 Metarhizium majus MAJ_02341 N 0.440
POPTR_0008s19330 Populus trichocarpa POPTR_0008s19330 I 0.440
X797_000915 Metarhizium robertsii X797_000915 N 0.440
CY34DRAFT_417575 Suillus luteus CY34DRAFT_417575 I 0.437
MAM_00136 Metarhizium album MAM_00136 N 0.433
MANI_015331 Metarhizium anisopliae MANI_015331 N 0.433
MGU_00155 Metarhizium guizhouense MGU_00155 N 0.433
Eucgr.B03310 Eucalyptus grandis Eucgr.B03310 I 0.433
CPUR_08694 Claviceps purpurea CPUR_08694 I 0.430
BGHDH14_bgh01382 Blumeria graminis BGHDH14_bgh01382 N 0.429
GSMUA_Achr6G31080_001 Musa acuminata GSMUA_Achr6G31080_001 I 0.429
GSMUA_Achr7G07830_001 Musa acuminata GSMUA_Achr7G07830_001 I 0.429
INO Vitis vinifera VIT_01s0127g00330 I 0.429
VIT_08s0032g01110 Vitis vinifera VIT_08s0032g01110 I 0.429
cassava41595.m1 Manihot esculenta cassava41595.m1 I 0.429
MDP0000263713 Malus domestica MDP0000263713 I 0.429
orange1.1g037247m.g Citrus sinensis orange1.1g037247m.g I 0.429
mgf001016m Mimulus guttatus mgf001016m I 0.426
CRC Arabidopsis thaliana AT1G69180 D 0.425
BGIOSGA013223 Oryza indica BGIOSGA013223 I 0.425
BGIOSGA037817 Oryza indica BGIOSGA037817 I 0.425
Bo6g108630 Brassica oleracea Bo6g108630 I 0.425
Bra004364 Brassica rapa Bra004364 I 0.425
BRADI1G13570 Brachypodium distachyon BRADI1G13570 I 0.425
BRADI4G01300 Brachypodium distachyon BRADI4G01300 I 0.425
F775_28710 Aegilops tauschii F775_28710 I 0.425
CRC Arabidopsis lyrata fgenesh2_kg.2__1172__AT1G69180.1 I 0.425
GRMZM2G074124 Zea mays GRMZM2G074124 I 0.425
GRMZM2G085873 Zea mays GRMZM2G085873 I 0.425
GRMZM2G116646 Zea mays GRMZM2G116646 I 0.425
GRMZM2G141955 Zea mays GRMZM2G141955 I 0.425
LPERR03G22960 Leersia perrieri LPERR03G22960 I 0.425
MLOC_66260 Hordeum vulgare MLOC_66260 I 0.425
MLOC_70676 Hordeum vulgare MLOC_70676 I 0.425
OB03G35470 Oryza brachyantha OB03G35470 I 0.425
OB12G26050 Oryza brachyantha OB12G26050 I 0.425
OBART03G27740 Oryza barthii OBART03G27740 I 0.425
OBART12G19190 Oryza barthii OBART12G19190 I 0.425
OGLUM03G28370 Oryza glumaepatula OGLUM03G28370 I 0.425
OGLUM12G20870 Oryza glumaepatula OGLUM12G20870 I 0.425
OLONG_018568 Oryza longistaminata OLONG_018568 I 0.425
OMERI12G13460 Oryza meridionalis OMERI12G13460 I 0.425
ONIVA02G03100 Oryza nivara ONIVA02G03100 I 0.425
ONIVA03G28660 Oryza nivara ONIVA03G28660 I 0.425
OPUNC03G25290 Oryza punctata OPUNC03G25290 I 0.425
OPUNC12G17340 Oryza punctata OPUNC12G17340 I 0.425
ORGLA12G0165000 Oryza glaberrima ORGLA12G0165000 I 0.425
ORUFI03G28820 Oryza rufipogon ORUFI03G28820 I 0.425
ORUFI12G21410 Oryza rufipogon ORUFI12G21410 I 0.425
YAB2 Oryza sativa OS03G0650000 I 0.425
YAB6 Oryza sativa OS12G0621100 I 0.425
POPTR_0016s06760 Populus trichocarpa POPTR_0016s06760 I 0.425
Sb01g013270 Sorghum bicolor Sb01g013270 I 0.425
Sb08g022030 Sorghum bicolor Sb08g022030 I 0.425
Si023308m.g Setaria italica Si023308m.g I 0.425
Si037789m.g Setaria italica Si037789m.g I 0.425
Traes_5AL_EB97D69D7 Triticum aestivum Traes_5AL_EB97D69D7 I 0.425
Traes_5AS_31C2540C0 Triticum aestivum Traes_5AS_31C2540C0 I 0.425
Traes_5BL_4DEC298F9 Triticum aestivum Traes_5BL_4DEC298F9 I 0.425
Traes_5BS_A782F7510 Triticum aestivum Traes_5BS_A782F7510 I 0.425
Traes_5DL_0E369E1FC Triticum aestivum Traes_5DL_0E369E1FC I 0.425
Traes_5DS_268147383 Triticum aestivum Traes_5DS_268147383 I 0.425
TRIUR3_18590 Triticum urartu TRIUR3_18590 I 0.425
TRIUR3_27402 Triticum urartu TRIUR3_27402 I 0.425
Bostr.10273s0455 Boechera stricta Bostr.10273s0455 I 0.425
Cagra.0537s0004 Capsella grandiflora Cagra.0537s0004 I 0.425
Carubv10021641m.g Capsella rubella Carubv10021641m.g I 0.425
MDP0000124879 Malus domestica MDP0000124879 I 0.425
MDP0000171878 Malus domestica MDP0000171878 I 0.425
MDP0000291729 Malus domestica MDP0000291729 I 0.425
Pavir.Ca02862 Panicum virgatum Pavir.Ca02862 I 0.425
Pavir.Cb00070 Panicum virgatum Pavir.Cb00070 I 0.425
Pavir.Ia01130 Panicum virgatum Pavir.Ia01130 I 0.425
Pavir.Ib04136 Panicum virgatum Pavir.Ib04136 I 0.425
SapurV1A.0258s0090 Salix purpurea SapurV1A.0258s0090 I 0.425
Thhalv10019126m.g Eutrema salsugineum Thhalv10019126m.g I 0.425
GSMUA_Achr8G04750_001 Musa acuminata GSMUA_Achr8G04750_001 I 0.424
GSMUA_Achr8G26600_001 Musa acuminata GSMUA_Achr8G26600_001 I 0.424
GUITHDRAFT_161762 Guillardia theta GUITHDRAFT_161762 N 0.424
Lus10024603.g Linum usitatissimum Lus10024603.g I 0.424
Lus10032240.g Linum usitatissimum Lus10032240.g I 0.424
GLYMA08G39290 Glycine max GLYMA08G39290 I 0.423
GLYMA18G19720 Glycine max GLYMA18G19720 I 0.423
cassava27370.m1 Manihot esculenta cassava27370.m1 I 0.423
MDP0000126221 Malus domestica MDP0000126221 I 0.423
chr2.CM0008.270.nc Lotus japonicus chr2.CM0008.270.nc I 0.423
BGIOSGA012115 Oryza indica BGIOSGA012115 I 0.421
BRADI1G69900 Brachypodium distachyon BRADI1G69900 I 0.421
GRMZM2G088309 Zea mays GRMZM2G088309 I 0.421
GRMZM2G102218 Zea mays GRMZM2G102218 I 0.421
GSMUA_Achr4G01430_001 Musa acuminata GSMUA_Achr4G01430_001 I 0.421
GSMUA_Achr5G08930_001 Musa acuminata GSMUA_Achr5G08930_001 I 0.421
GSMUA_Achr6G24550_001 Musa acuminata GSMUA_Achr6G24550_001 I 0.421
LPERR03G07620 Leersia perrieri LPERR03G07620 I 0.421
OB03G18700 Oryza brachyantha OB03G18700 I 0.421
OBART03G08320 Oryza barthii OBART03G08320 I 0.421
OGLUM03G08460 Oryza glumaepatula OGLUM03G08460 I 0.421
OLONG_009200 Oryza longistaminata OLONG_009200 I 0.421
OMERI03G08070 Oryza meridionalis OMERI03G08070 I 0.421
ONIVA03G09180 Oryza nivara ONIVA03G09180 I 0.421
OPUNC03G08080 Oryza punctata OPUNC03G08080 I 0.421
ORGLA03G0081000 Oryza glaberrima ORGLA03G0081000 I 0.421
ORUFI03G08400 Oryza rufipogon ORUFI03G08400 I 0.421
OS03G0215200 Oryza sativa OS03G0215200 I 0.421
POPTR_0008s09740 Populus trichocarpa POPTR_0008s09740 I 0.421
Sb01g042850 Sorghum bicolor Sb01g042850 I 0.421
Si037608m.g Setaria italica Si037608m.g I 0.421
Traes_4AS_BE972A2661 Triticum aestivum Traes_4AS_BE972A2661 I 0.421
Traes_4AS_BE972A266 Triticum aestivum Traes_4AS_BE972A266 I 0.421
Traes_4BL_34FE2C7F2 Triticum aestivum Traes_4BL_34FE2C7F2 I 0.421
TRIUR3_31693 Triticum urartu TRIUR3_31693 I 0.421
Ciclev10033770m.g Citrus clementina Ciclev10033770m.g I 0.421
Pavir.Ia04690 Panicum virgatum Pavir.Ia04690 I 0.421
Pavir.Ib00755 Panicum virgatum Pavir.Ib00755 I 0.421
SapurV1A.0176s0460 Salix purpurea SapurV1A.0176s0460 I 0.421
PDK_20s1325902g001 Phoenix dactylifera PDK_20s1325902g001 I 0.421
UCRNP2_5126 Neofusicoccum parvum UCRNP2_5126 N 0.420
AMTR_s00004p00165390 Amborella trichopoda AMTR_s00004p00165390 I 0.419
AMTR_s00078p00029420 Amborella trichopoda AMTR_s00078p00029420 I 0.419
AMTR_s00085p00032940 Amborella trichopoda AMTR_s00085p00032940 I 0.419
YAB2 Arabidopsis thaliana AT1G08465 I 0.419
YAB1 Arabidopsis thaliana AT2G45190 D 0.419
YAB3 Arabidopsis thaliana AT4G00180 I 0.419
Bo3g037630 Brassica oleracea Bo3g037630 I 0.419
Bo4g195410 Brassica oleracea Bo4g195410 I 0.419
Bo5g009010 Brassica oleracea Bo5g009010 I 0.419
Bo6g073320 Brassica oleracea Bo6g073320 I 0.419
Bo8g055830 Brassica oleracea Bo8g055830 I 0.419
Bo8g112450 Brassica oleracea Bo8g112450 I 0.419
Bo9g001130 Brassica oleracea Bo9g001130 I 0.419
Bra000378 Brassica rapa Bra000378 I 0.419
Bra003309 Brassica rapa Bra003309 I 0.419
Bra018624 Brassica rapa Bra018624 I 0.419
Bra030728 Brassica rapa Bra030728 I 0.419
Bra031629 Brassica rapa Bra031629 I 0.419
Bra037320 Brassica rapa Bra037320 I 0.419
Bra040322 Brassica rapa Bra040322 I 0.419
YAB2 Arabidopsis lyrata fgenesh2_kg.1__861__AT1G08465.1 I 0.419
YAB3 Arabidopsis lyrata fgenesh2_kg.6__3684__AT4G00180.1 I 0.419
GLYMA06G46560 Glycine max GLYMA06G46560 I 0.419
GLYMA12G10210 Glycine max GLYMA12G10210 I 0.419
GLYMA12G31670 Glycine max GLYMA12G31670 I 0.419
GLYMA13G38750 Glycine max GLYMA13G38750 I 0.419
GRMZM2G106204 Zea mays GRMZM2G106204 I 0.419
GSMUA_Achr2G12850_001 Musa acuminata GSMUA_Achr2G12850_001 I 0.419
GSMUA_Achr3G15060_001 Musa acuminata GSMUA_Achr3G15060_001 I 0.419
GSMUA_Achr7G01330_001 Musa acuminata GSMUA_Achr7G01330_001 I 0.419
LPERR07G03250 Leersia perrieri LPERR07G03250 I 0.419
MTR_2g087740 Medicago truncatula MTR_2g087740 I 0.419
MTR_4g050300 Medicago truncatula MTR_4g050300 I 0.419
MTR_5g034030 Medicago truncatula MTR_5g034030 I 0.419
OB07G12810 Oryza brachyantha OB07G12810 I 0.419
OMERI07G02330 Oryza meridionalis OMERI07G02330 I 0.419
OPUNC07G03670 Oryza punctata OPUNC07G03670 I 0.419
ORUFI07G03450 Oryza rufipogon ORUFI07G03450 I 0.419
YAB1 Oryza sativa OS07G0160100 I 0.419
PGSC0003DMG400002988 Solanum tuberosum PGSC0003DMG400002988 I 0.419
PGSC0003DMG400004741 Solanum tuberosum PGSC0003DMG400004741 I 0.419
PGSC0003DMG400005936 Solanum tuberosum PGSC0003DMG400005936 I 0.419
YAB2 Populus trichocarpa POPTR_0001s22180 I 0.419
PRUPE_ppa011880m2g Prunus persica PRUPE_ppa011880m2g I 0.419
Sb02g003390 Sorghum bicolor Sb02g003390 I 0.419
AFO Arabidopsis lyrata scaffold_403460.1 I 0.419
Si030811m.g Setaria italica Si030811m.g I 0.419
Solyc06g073920.2 Solanum lycopersicum Solyc06g073920.2 I 0.419
Solyc08g079100.2 Solanum lycopersicum Solyc08g079100.2 I 0.419
Solyc11g071810.1 Solanum lycopersicum Solyc11g071810.1 I 0.419
TCM_041175 Theobroma cacao TCM_041175 I 0.419
YAB2 Vitis vinifera VIT_06s0009g00880 I 0.419
Ca_07101 Cicer arietinum Ca_07101 I 0.419
Cla008752 Citrullus lanatus Cla008752 I 0.419
Pm001547 Prunus mume Pm001547 I 0.419
29854.m001136 Ricinus communis 29854.m001136 I 0.419
cassava39022.m1 Manihot esculenta cassava39022.m1 I 0.419
cassava40986.m1 Manihot esculenta cassava40986.m1 I 0.419
Cucsa.086660 Cucumis sativus Cucsa.086660 I 0.419
mgf009982m Mimulus guttatus mgf009982m I 0.419
mgf019496m Mimulus guttatus mgf019496m I 0.419
Aquca_009_00652 Aquilegia coerulea Aquca_009_00652 I 0.419
Bostr.14547s0027 Boechera stricta Bostr.14547s0027 I 0.419
Bostr.25219s0098 Boechera stricta Bostr.25219s0098 I 0.419
Bostr.25993s0255 Boechera stricta Bostr.25993s0255 I 0.419
Cagra.0239s0072 Capsella grandiflora Cagra.0239s0072 I 0.419
Cagra.1261s0010 Capsella grandiflora Cagra.1261s0010 I 0.419
Cagra.4395s0036 Capsella grandiflora Cagra.4395s0036 I 0.419
Carubv10001833m.g Capsella rubella Carubv10001833m.g I 0.419
Carubv10010384m.g Capsella rubella Carubv10010384m.g I 0.419
Carubv10024011m.g Capsella rubella Carubv10024011m.g I 0.419
Ciclev10029354m.g Citrus clementina Ciclev10029354m.g I 0.419
Eucgr.D02474 Eucalyptus grandis Eucgr.D02474 I 0.419
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I 0.419
evm.TU.supercontig_103.34 Carica papaya evm.TU.supercontig_103.34 I 0.419
evm.TU.supercontig_104.5 Carica papaya evm.TU.supercontig_104.5 I 0.419
gene03938-v1.0-hybrid Fragaria vesca gene03938-v1.0-hybrid I 0.419
Gorai.001G127000 Gossypium raimondii Gorai.001G127000 I 0.419
Gorai.006G117800 Gossypium raimondii Gorai.006G117800 I 0.419
Gorai.010G062900 Gossypium raimondii Gorai.010G062900 I 0.419
MDP0000252640 Malus domestica MDP0000252640 I 0.419
MDP0000331808 Malus domestica MDP0000331808 I 0.419
MDP0000366291 Malus domestica MDP0000366291 I 0.419
MDP0000500810 Malus domestica MDP0000500810 I 0.419
orange1.1g029862m.g Citrus sinensis orange1.1g029862m.g I 0.419
Pavir.Ba03779 Panicum virgatum Pavir.Ba03779 I 0.419
SapurV1A.0288s0210 Salix purpurea SapurV1A.0288s0210 I 0.419
SapurV1A.3336s0010 Salix purpurea SapurV1A.3336s0010 I 0.419
Thhalv10001617m.g Eutrema salsugineum Thhalv10001617m.g I 0.419
Thhalv10008858m.g Eutrema salsugineum Thhalv10008858m.g I 0.419
Thhalv10028925m.g Eutrema salsugineum Thhalv10028925m.g I 0.419
PK06964.1 Cannabis sativa PK06964.1 I 0.419