Pm025349 (Prunus mume)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pm025349 T343085_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.798 0.798
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.798 0.798
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.798 0.798
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.782 0.782
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.782 0.782
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.782 0.782
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.782 0.782
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.782 0.782
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.782 0.782
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.782 0.782
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.782 0.782
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.782 0.782
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.782 0.782
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm025349 TBP 23 98
Pm025349 TBP 96 143

Links

Other TBP family TFs
Other Prunus mume TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.863
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.863
MDP0000289755 Malus domestica MDP0000289755 I 0.855
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.855
mgf009543m Mimulus guttatus mgf009543m I 0.855
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.847
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.847
Bo6g051360 Brassica oleracea Bo6g051360 I 0.847
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.847
Si023295m.g Setaria italica Si023295m.g I 0.847
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.847
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.847
Pm000066 Prunus mume Pm000066 I 0.839
Bra030855 Brassica rapa Bra030855 I 0.839
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.839
Bo3g185290 Brassica oleracea Bo3g185290 I 0.839
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.839
TBP2 Arabidopsis thaliana AT1G55520 I 0.839
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.839
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.831
OS10G0432300 Oryza sativa OS10G0432300 I 0.831
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.831
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.831
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.831
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.831
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.831
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.831
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.823
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.823
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.815
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.815
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.815
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.806
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.806
GMDG_00522 Pseudogymnoascus destructans GMDG_00522 I 0.798
MGYG_01238 Microsporum gypseum MGYG_01238 I 0.798
H105_07693 Trichophyton soudanense H105_07693 I 0.798
H102_07668 Trichophyton rubrum H102_07668 I 0.798
MCYG_00725 Arthroderma otae MCYG_00725 I 0.798
HCBG_06828 Histoplasma capsulatum HCBG_06828 I 0.798
TRV_02367 Trichophyton verrucosum TRV_02367 I 0.798
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I 0.798
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.798
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.798
D917_07868 Trichinella nativa D917_07868 I 0.798
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.798
V499_02736 Pseudogymnoascus pannorum V499_02736 I 0.798
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.798
PV10_01351 Exophiala mesophila PV10_01351 I 0.798
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.798
TESG_08364 Trichophyton tonsurans TESG_08364 I 0.798
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.798
PDE_04702 Penicillium oxalicum PDE_04702 I 0.798
CPC735_006990 Coccidioides posadasii CPC735_006990 I 0.798
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.798
CIMG_11148 Coccidioides immitis CIMG_11148 I 0.798
BDDG_03170 Blastomyces dermatitidis BDDG_03170 I 0.798
EFV53163 Trichinella spiralis EFV53163 I 0.798
PV04_08198 Capronia semiimmersa PV04_08198 I 0.790
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.790
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.790
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.790
PV11_06323 Exophiala sideris PV11_06323 I 0.790
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.790
ML03273a Mnemiopsis leidyi ML03273a I 0.790
PV06_02313 Exophiala oligosperma PV06_02313 I 0.790
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.790
PV07_11953 Cladophialophora immunda PV07_11953 I 0.790
PV05_09095 Exophiala xenobiotica PV05_09095 I 0.790
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.790
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.790
Bra028725 Brassica rapa Bra028725 I 0.790
UCREL1_11678 Eutypa lata UCREL1_11678 I 0.790
Bo2g007300 Brassica oleracea Bo2g007300 I 0.790
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.790
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.790
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.790
Z517_03367 Fonsecaea pedrosoi Z517_03367 I 0.790
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.790
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.790
CMQ_1115 Grosmannia clavigera CMQ_1115 I 0.782
DI09_319p10 Microsporidia sp DI09_319p10 I 0.782
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I 0.782
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.782
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.782
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.782
tbp Danio rerio ENSDARG00000014994 I 0.782
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.782
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.782
H311_04080 Anncaliia algerae H311_04080 I 0.782
J056_000874 Wallemia ichthyophaga J056_000874 I 0.782
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.782
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.782
H101_08207 Trichophyton interdigitale H101_08207 I 0.782
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.782
trf3 Takifugu rubripes ENSTRUG00000009283 I 0.782
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.774
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.774
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.774
GI18943 Drosophila mojavensis FBgn0141682 I 0.774
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.774
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.774
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.774
TC008403 Tribolium castaneum TC008403 I 0.774
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.774
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.774
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.774
PV09_01314 Verruconis gallopava PV09_01314 I 0.774
Tal_R008176 Tyto alba Tal_R008176 I 0.774
T265_13707 Opisthorchis viverrini T265_13707 I 0.774
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.774
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.774
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.774
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.774
PHUM533080 Pediculus humanus PHUM533080 I 0.774
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.774
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.774
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.774
Moror_8271 Moniliophthora roreri Moror_8271 I 0.774
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.774
TBPL2 Gallus gallus ENSGALG00000012145 I 0.774
csin110354 Clonorchis sinensis csin110354 I 0.774
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.774
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.774
ATG14 Dasypus novemcinctus ENSDNOG00000015108 I 0.766
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.766
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.766
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.766
MCINX007129 Melitaea cinxia MCINX007129 I 0.766
GB47180 Apis mellifera GB47180 I 0.766
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.766
tbp Oryzias latipes ENSORLG00000010757 I 0.766
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.766
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.766
KGM_04261 Danaus plexippus KGM_04261 I 0.766
HMEL016424 Heliconius melpomene HMEL016424 I 0.766
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.766
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.766
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.766
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.766
PPA00840 Pristionchus pacificus PPA00840 I 0.766
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.766
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.766
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.766
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.766
CJA15284 Caenorhabditis japonica CJA15284 I 0.758
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.758
L889_g25192 Steinernema feltiae L889_g25192 I 0.758
ACEP14716 Atta cephalotes ACEP14716 I 0.758
CHLREDRAFT_144556 Chlamydomonas reinhardtii CHLREDRAFT_144556 I 0.758
CBG09138 Caenorhabditis briggsae CBG09138 I 0.758
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.758
LjSGA_031793.1 Lotus japonicus LjSGA_031793.1 I 0.758
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.758
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.758
Lus10031531.g Linum usitatissimum Lus10031531.g I 0.758
SINV24483 Solenopsis invicta SINV24483 I 0.758
NAPIS_ORF01258 Nosema apis NAPIS_ORF01258 I 0.758
PIIN_00750 Piriformospora indica PIIN_00750 I 0.758
VCUG_02118 Vavraia culicis VCUG_02118 I 0.758
CRE07760 Caenorhabditis remanei CRE07760 I 0.758
NAPIS_ORF00497 Nosema apis NAPIS_ORF00497 I 0.758
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.758
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.758
THOM_0429 Trachipleistophora hominis THOM_0429 I 0.758
L898_g32593 Steinernema monticolum L898_g32593 I 0.750
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.750
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.750
SPBR_06113 Sporothrix brasiliensis SPBR_06113 I 0.750
Sb01g017130 Sorghum bicolor Sb01g017130 I 0.750
Alligator_sinensis_CCG004402.1 Alligator sinensis Alligator_sinensis_CCG004402.1 I 0.750
Aan_R001616 Calypte anna Aan_R001616 I 0.750
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.750
CMQ_6369 Grosmannia clavigera CMQ_6369 I 0.750
ENSBTAG00000046809 Bos taurus ENSBTAG00000046809 I 0.742
L804_06395 Cryptococcus gattii L804_06395 I 0.742
CNH01090 Cryptococcus neoformans CNH01090 I 0.742
Si039719m.g Setaria italica Si039719m.g I 0.742
LotgiG129673 Lottia gigantea LotgiG129673 I 0.734
HmN_000119900 Hymenolepis microstoma HmN_000119900 I 0.734
HNAJ_0000219201 Hymenolepis nana HNAJ_0000219201 I 0.734
29822.m003403 Ricinus communis 29822.m003403 I 0.734
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.734
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.734
Aquca_124_00015 Aquilegia coerulea Aquca_124_00015 I 0.726
EBI_26482 Enterocytozoon bieneusi EBI_26482 I 0.726
TCM_001402 Theobroma cacao TCM_001402 I 0.726
Tbp Mus musculus ENSMUSG00000014767 D 0.721
e_gw1.11.176.1 Naegleria gruberi e_gw1.11.176.1 I 0.718
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I 0.718
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.718
Contig262.1.g32 Oxytricha trifallax Contig262.1.g32 I 0.710
CAOG_06656 Capsaspora owczarzaki CAOG_06656 I 0.710
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.700