Pavir.Eb03562 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Eb03562 T356759_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY21
M02553_2.00 		Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7422 		0.808 0.467
WRKY21
M07389_2.00 		Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a 		0.808 0.467
WRKY21
M07390_2.00 		Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY21_col 		0.808 0.467
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.808 0.450
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb03562.1.p WRKY 126 187

Links

Other WRKY family TFs
Other Panicum virgatum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ea03257 Panicum virgatum Pavir.Ea03257 I 0.902
Si002121m.g Setaria italica Si002121m.g I 0.897
Sb03g038200 Sorghum bicolor Sb03g038200 N 0.885
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.879
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.847
F775_23296 Aegilops tauschii F775_23296 N 0.841
Pavir.J33941 Panicum virgatum Pavir.J33941 N 0.838
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I 0.834
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.824
Si036565m.g Setaria italica Si036565m.g I 0.824
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.824
Si004791m.g Setaria italica Si004791m.g I 0.824
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.821
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.818
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.818
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.817
GRMZM2G030272 Zea mays GRMZM2G030272 N 0.817
TCM_016012 Theobroma cacao TCM_016012 I 0.816
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.816
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.816
28455.m000362 Ricinus communis 28455.m000362 I 0.816
cassava33373.m1 Manihot esculenta cassava33373.m1 I 0.816
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.815
PRUPE_ppa023256mg Prunus persica PRUPE_ppa023256mg I 0.815
Pm023533 Prunus mume Pm023533 I 0.815
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.815
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.815
cassava43475.valid.m1 Manihot esculenta cassava43475.valid.m1 I 0.814
F775_22808 Aegilops tauschii F775_22808 I 0.814
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.814
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.813
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.813
Si039519m.g Setaria italica Si039519m.g N 0.812
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.812
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.812
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.812
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.812
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.812
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.812
MLOC_11088 Hordeum vulgare MLOC_11088 N 0.812
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.812
OS05G0478400 Oryza sativa OS05G0478400 I 0.812
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.812
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.812
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.812
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.811
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.811
MLOC_15430 Hordeum vulgare MLOC_15430 I 0.811
Sb02g011050 Sorghum bicolor Sb02g011050 I 0.811
F775_43334 Aegilops tauschii F775_43334 I 0.811
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.811
Traes_5BL_8688F70C9 Triticum aestivum Traes_5BL_8688F70C9 I 0.811
Lus10021999.g Linum usitatissimum Lus10021999.g I 0.811
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.811
Lus10042538.g Linum usitatissimum Lus10042538.g I 0.811
TRIUR3_22129 Triticum urartu TRIUR3_22129 N 0.810
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.810
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.810
ORGLA01G0291600 Oryza glaberrima ORGLA01G0291600 N 0.810
ORGLA01G0292000 Oryza glaberrima ORGLA01G0292000 N 0.810
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.810
Traes_1BL_46340D685 Triticum aestivum Traes_1BL_46340D685 N 0.810
Traes_1AL_309623B48 Triticum aestivum Traes_1AL_309623B48 N 0.810
Traes_1DL_DFE1721E0 Triticum aestivum Traes_1DL_DFE1721E0 N 0.810
OS01G0820400 Oryza sativa OS01G0820400 N 0.810
ORUFI01G38680 Oryza rufipogon ORUFI01G38680 N 0.810
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.810
ORUFI01G38630 Oryza rufipogon ORUFI01G38630 N 0.810
OPUNC01G34290 Oryza punctata OPUNC01G34290 N 0.810
OLONG_000628 Oryza longistaminata OLONG_000628 N 0.810
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.810
OMERI01G32440 Oryza meridionalis OMERI01G32440 N 0.810
OGLUM01G39380 Oryza glumaepatula OGLUM01G39380 N 0.810
OGLUM01G39350 Oryza glumaepatula OGLUM01G39350 N 0.810
F775_02926 Aegilops tauschii F775_02926 N 0.810
OBART01G35280 Oryza barthii OBART01G35280 N 0.810
OBART01G35350 Oryza barthii OBART01G35350 I 0.810
BGIOSGA000583 Oryza indica BGIOSGA000583 N 0.810
OBART05G20330 Oryza barthii OBART05G20330 I 0.810
ONIVA01G40380 Oryza nivara ONIVA01G40380 N 0.810
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.810
OPUNC01G34260 Oryza punctata OPUNC01G34260 N 0.810
gene16584-v1.0-hybrid Fragaria vesca gene16584-v1.0-hybrid I 0.809
OB01G44150 Oryza brachyantha OB01G44150 I 0.809
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.809
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.809
LPERR01G30500 Leersia perrieri LPERR01G30500 I 0.809
BRADI2G22230 Brachypodium distachyon BRADI2G22230 I 0.809
GLYMA01G43420 Glycine max GLYMA01G43420 I 0.809
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.809
OB05G27850 Oryza brachyantha OB05G27850 I 0.809
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.809
BGIOSGA004701 Oryza indica BGIOSGA004701 N 0.809
OBART05G20340 Oryza barthii OBART05G20340 I 0.809
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.808
MDP0000234335 Malus domestica MDP0000234335 I 0.808
Cagra.0567s0023 Capsella grandiflora Cagra.0567s0023 I 0.808
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.808
Bostr.24513s0175 Boechera stricta Bostr.24513s0175 I 0.808
Bra018303 Brassica rapa Bra018303 I 0.808
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.808
Bo4g173290 Brassica oleracea Bo4g173290 I 0.808
Carubv10023424m.g Capsella rubella Carubv10023424m.g I 0.808
WRKY62 Arabidopsis thaliana AT5G01900 D 0.808
Thhalv10016853m.g Eutrema salsugineum Thhalv10016853m.g I 0.808
Gorai.007G122300 Gossypium raimondii Gorai.007G122300 I 0.808
SapurV1A.1571s0090 Salix purpurea SapurV1A.1571s0090 I 0.808
Gorai.004G247000 Gossypium raimondii Gorai.004G247000 I 0.808
Bo3g024750 Brassica oleracea Bo3g024750 I 0.808
Bo4g056260 Brassica oleracea Bo4g056260 I 0.808
WRKY21 Arabidopsis thaliana AT2G30590 D 0.808
BGIOSGA019117 Oryza indica BGIOSGA019117 I 0.808
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I 0.808
ORUFI05G02200 Oryza rufipogon ORUFI05G02200 I 0.808
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.808
OS03G0335200 Oryza sativa OS03G0335200 I 0.808
OGLUM05G02170 Oryza glumaepatula OGLUM05G02170 I 0.808
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.808
OMERI01G32500 Oryza meridionalis OMERI01G32500 N 0.808
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.808
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.808
OMERI05G02210 Oryza meridionalis OMERI05G02210 I 0.808
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.808
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.808
WRKY21 Arabidopsis lyrata scaffold_401549.1 I 0.808
Traes_3DL_2551BF2C1 Triticum aestivum Traes_3DL_2551BF2C1 N 0.808
F775_22564 Aegilops tauschii F775_22564 I 0.808
TRIUR3_27575 Triticum urartu TRIUR3_27575 I 0.808
Bra022808 Brassica rapa Bra022808 I 0.808
LPERR05G01920 Leersia perrieri LPERR05G01920 I 0.808
MLOC_22356 Hordeum vulgare MLOC_22356 I 0.808
OBART05G02110 Oryza barthii OBART05G02110 I 0.808
OBART03G16400 Oryza barthii OBART03G16400 I 0.808
OB03G26140 Oryza brachyantha OB03G26140 I 0.808
MLOC_6114 Hordeum vulgare MLOC_6114 I 0.808
Bra021652 Brassica rapa Bra021652 I 0.808