WRKY62 (Arabidopsis lyrata)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03106 (WRKY) IPR003657 Al_scaffold_0006_13 T351852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.891 0.983
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.850 0.695
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.848 0.695
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0006_13 WRKY 110 170

Links

Other WRKY family TFs
Other Arabidopsis lyrata TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY62 Arabidopsis thaliana AT5G01900 D 0.891
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.880
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.880
Bra028918 Brassica rapa Bra028918 I 0.877
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.877
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.876
Bo5g068250 Brassica oleracea Bo5g068250 I 0.869
Bra023211 Brassica rapa Bra023211 I 0.869
WRKY38 Arabidopsis thaliana AT5G22570 D 0.850
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.850
WRKY64 Arabidopsis thaliana AT1G66560 I 0.849
WRKY63 Arabidopsis thaliana AT1G66600 D 0.848
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.848
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.847
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.847
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.847
WRKY66 Arabidopsis thaliana AT1G80590 I 0.846
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.846
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.843
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.843
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.842
Bo01002s040 Brassica oleracea Bo01002s040 I 0.841
Bra002421 Brassica rapa Bra002421 I 0.841
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.840
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.840
WRKY67 Arabidopsis thaliana AT1G66550 I 0.838
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.838
Bo2g095820 Brassica oleracea Bo2g095820 I 0.837
Bra008459 Brassica rapa Bra008459 I 0.837
Bra020196 Brassica rapa Bra020196 I 0.837
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.837
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.836
Bo2g024040 Brassica oleracea Bo2g024040 I 0.835
Bra008454 Brassica rapa Bra008454 I 0.835
Bra020197 Brassica rapa Bra020197 I 0.835
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.835
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.833
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.833
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.832
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.827
OB05G27850 Oryza brachyantha OB05G27850 I 0.826
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.826
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.826
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.826
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.825
TCM_045555 Theobroma cacao TCM_045555 I 0.824
WRKY55 Vitis vinifera VIT_13s0067g03130 I 0.824
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.824
MDP0000828055 Malus domestica MDP0000828055 I 0.824
Bo6g066790 Brassica oleracea Bo6g066790 I 0.823
GLYMA04G40121 Glycine max GLYMA04G40121 I 0.823
OBART05G20330 Oryza barthii OBART05G20330 I 0.823
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.823
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.823
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.823
OB01G44150 Oryza brachyantha OB01G44150 I 0.822
Pm019076 Prunus mume Pm019076 I 0.822
GLYMA06G14731 Glycine max GLYMA06G14731 I 0.821
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.821
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.821
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.821
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I 0.821
Ca_21669 Cicer arietinum Ca_21669 I 0.820
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.820
MDP0000460139 Malus domestica MDP0000460139 I 0.820
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.819
Si028202m.g Setaria italica Si028202m.g I 0.819
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I 0.818
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.818
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.818
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.818
PRUPE_ppa014826mg Prunus persica PRUPE_ppa014826mg I 0.818
29729.m002370 Ricinus communis 29729.m002370 I 0.818
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.817
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.817
OB05G17240 Oryza brachyantha OB05G17240 I 0.817
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.817
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.817
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.817
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.817
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.817
OS05G0478800 Oryza sativa OS05G0478800 I 0.817
PGSC0003DMG400008776 Solanum tuberosum PGSC0003DMG400008776 I 0.817
mgf026576m Mimulus guttatus mgf026576m I 0.817
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.817
POPTR_0013s09460 Populus trichocarpa POPTR_0013s09460 I 0.816
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.816
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.816
Si012735m.g Setaria italica Si012735m.g I 0.816
29729.m002330 Ricinus communis 29729.m002330 I 0.816
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.815
MTR_5g067680 Medicago truncatula MTR_5g067680 I 0.815
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.815
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.814
Bra008456 Brassica rapa Bra008456 I 0.814
Bra016975 Brassica rapa Bra016975 I 0.814
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.814
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.814
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.814
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.814
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.814
OS05G0478400 Oryza sativa OS05G0478400 I 0.814
Si036565m.g Setaria italica Si036565m.g I 0.814
cassava8741.m1 Manihot esculenta cassava8741.m1 I 0.814
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.814
BGIOSGA004704 Oryza indica BGIOSGA004704 I 0.813
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.813
F775_23182 Aegilops tauschii F775_23182 I 0.813
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.813
OB01G44140 Oryza brachyantha OB01G44140 I 0.813
OBART01G35350 Oryza barthii OBART01G35350 I 0.813
OBART05G20340 Oryza barthii OBART05G20340 I 0.813
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.813
ONIVA01G40370 Oryza nivara ONIVA01G40370 I 0.813
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I 0.813
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I 0.813
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I 0.813
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I 0.813
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.813
evm.TU.supercontig_19.45 Carica papaya evm.TU.supercontig_19.45 I 0.813
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.813
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.813
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.813
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.812
BGIOSGA034612 Oryza indica BGIOSGA034612 I 0.812
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.812
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.812
OBART11G01110 Oryza barthii OBART11G01110 I 0.812
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I 0.812
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.812
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.812
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.812
ONIVA11G01240 Oryza nivara ONIVA11G01240 I 0.812
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.812
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I 0.812
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.812
OS01G0820700 Oryza sativa OS01G0820700 I 0.812
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.812
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.812
Lus10029022.g Linum usitatissimum Lus10029022.g I 0.812
Al_scaffold_0005_2548 Arabidopsis lyrata Al_scaffold_0005_2548 I 0.811
Bo3g035130 Brassica oleracea Bo3g035130 I 0.811
Bra000202 Brassica rapa Bra000202 I 0.811
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.811
GLYMA16G34590 Glycine max GLYMA16G34590 I 0.811
GRMZM2G005207 Zea mays GRMZM2G005207 I 0.811
OB05G27830 Oryza brachyantha OB05G27830 I 0.811
OBART01G35310 Oryza barthii OBART01G35310 I 0.811
OPUNC01G34280 Oryza punctata OPUNC01G34280 I 0.811
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.811
Cucsa.143840 Cucumis sativus Cucsa.143840 I 0.811
Cagra.0925s0055 Capsella grandiflora Cagra.0925s0055 I 0.811
Carubv10017859m.g Capsella rubella Carubv10017859m.g I 0.811
Eucgr.G03144 Eucalyptus grandis Eucgr.G03144 I 0.811
GLYMA13G34261 Glycine max GLYMA13G34261 I 0.810
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.810
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.810
MTR_0002s1250 Medicago truncatula MTR_0002s1250 I 0.810
Si002121m.g Setaria italica Si002121m.g I 0.810
Ca_18932 Cicer arietinum Ca_18932 I 0.810
cassava26362.m1 Manihot esculenta cassava26362.m1 I 0.810
Eucgr.J00107 Eucalyptus grandis Eucgr.J00107 I 0.810
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.810
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.809
Bo4g190380 Brassica oleracea Bo4g190380 I 0.809
WRKY55 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001817 I 0.809
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.809
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I 0.809
OMERI11G01540 Oryza meridionalis OMERI11G01540 I 0.809
OMERI11G01580 Oryza meridionalis OMERI11G01580 I 0.809
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.809
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.809
Cla007423 Citrullus lanatus Cla007423 I 0.809
Bostr.9345s0061 Boechera stricta Bostr.9345s0061 I 0.809
Cagra.1642s0038 Capsella grandiflora Cagra.1642s0038 I 0.809
Carubv10023773m.g Capsella rubella Carubv10023773m.g I 0.809
gene21364-v1.0-hybrid Fragaria vesca gene21364-v1.0-hybrid I 0.809
Pavir.J12092 Panicum virgatum Pavir.J12092 I 0.809
Thhalv10017926m.g Eutrema salsugineum Thhalv10017926m.g I 0.809
BGIOSGA017556 Oryza indica BGIOSGA017556 I 0.808
F775_02122 Aegilops tauschii F775_02122 I 0.808
F775_15928 Aegilops tauschii F775_15928 I 0.808
OBART05G08130 Oryza barthii OBART05G08130 I 0.808
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I 0.808
OLONG_019907 Oryza longistaminata OLONG_019907 I 0.808
OMERI01G32490 Oryza meridionalis OMERI01G32490 I 0.808
ONIVA05G08650 Oryza nivara ONIVA05G08650 I 0.808
OPUNC05G07410 Oryza punctata OPUNC05G07410 I 0.808
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I 0.808
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I 0.808
TRIUR3_06813 Triticum urartu TRIUR3_06813 I 0.808
Ca_12915 Cicer arietinum Ca_12915 I 0.808
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.808
Pavir.Eb03562 Panicum virgatum Pavir.Eb03562 I 0.808
SapurV1A.2126s0010 Salix purpurea SapurV1A.2126s0010 I 0.808