cassava46663.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava46663.m1 T006955_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.690 0.717
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.690 0.717
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava46663.m1 AP2 71 131

Links

Other AP2 family TFs
Other Manihot esculenta TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.724
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.714
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.714
TCM_021596 Theobroma cacao TCM_021596 I 0.710
PK07829.1 Cannabis sativa PK07829.1 I 0.709
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.704
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.704
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.704
29820.m001008 Ricinus communis 29820.m001008 I 0.702
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.693
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.690
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.690
DREB2A Arabidopsis thaliana AT5G05410 D 0.690
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.690
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.690
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.686
Thhalv10017658m.g Eutrema salsugineum Thhalv10017658m.g I 0.684