Carubv10025387m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10025387m.g T007926_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.861 1.000
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.837 0.949
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.823 0.939
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.791 0.827
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025387m AP2 158 207
Carubv10025387m AP2 250 301

Links

Other AP2 family TFs
Other Capsella rubella TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28752.m000339 Ricinus communis 28752.m000339 I 0.844
29169.m000017 Ricinus communis 29169.m000017 I 0.825
29805.m001494 Ricinus communis 29805.m001494 I 0.837
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.844
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.805
AP2 Arabidopsis thaliana AT4G36920 I 0.837
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.837
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.831
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.834
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.844
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.834
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.828
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.844
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.814
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.838
Bo1g004960 Brassica oleracea Bo1g004960 I 0.837
Bo4g070350 Brassica oleracea Bo4g070350 I 0.846
Bo7g064000 Brassica oleracea Bo7g064000 I 0.799
Bo7g118400 Brassica oleracea Bo7g118400 I 0.837
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.785
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.837
Bra011741 Brassica rapa Bra011741 I 0.837
Bra011939 Brassica rapa Bra011939 I 0.846
Bra012139 Brassica rapa Bra012139 I 0.799
Bra017809 Brassica rapa Bra017809 I 0.837
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.792
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.836
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.838
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.827
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.785
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.861
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.837
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.837
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.785
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.825
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.844
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.796
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.822
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.844
Ca_02499 Cicer arietinum Ca_02499 I 0.844
Ca_09295 Cicer arietinum Ca_09295 I 0.837
Ca_12010 Cicer arietinum Ca_12010 I 0.824
Ca_14618 Cicer arietinum Ca_14618 I 0.840
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.835
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.844
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.768
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.799
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.839
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.812
Cla000716 Citrullus lanatus Cla000716 I 0.836
Cla018124 Citrullus lanatus Cla018124 I 0.838
Cla018549 Citrullus lanatus Cla018549 I 0.776
Cla020549 Citrullus lanatus Cla020549 I 0.795
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.827
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.781
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.836
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.838
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.841
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.822
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.819
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.844
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.821
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.800
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.836
F775_32962 Aegilops tauschii F775_32962 I 0.838
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.781
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.819
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.786
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.836
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.841
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.836
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.844
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.844
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.844
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.816
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.836
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.819
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.843
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.836
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.838
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.833
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.833
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.827
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.816
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.791
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.828
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.834
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.811
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.839
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.836
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.843
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.822
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.837
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.836
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.836
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.825
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.822
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.812
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.827
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.841
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.841
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.827
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.831
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.800
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.843
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.821
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.840
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.835
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.840
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.841
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.780
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.814
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.798
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.826
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.806
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.826
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.826
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.816
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.831
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.816
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.793
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.789
MDP0000137561 Malus domestica MDP0000137561 I 0.820
MDP0000163645 Malus domestica MDP0000163645 I 0.805
MDP0000181606 Malus domestica MDP0000181606 I 0.839
MDP0000200319 Malus domestica MDP0000200319 I 0.843
mgf005133m Mimulus guttatus mgf005133m I 0.820
mgf009315m Mimulus guttatus mgf009315m I 0.835
mgf010466m Mimulus guttatus mgf010466m I 0.820
mgf021945m Mimulus guttatus mgf021945m I 0.835
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.792
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.839
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.841
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.846
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.837
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.836
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.824
OB03G45870 Oryza brachyantha OB03G45870 I 0.825
OB06G29960 Oryza brachyantha OB06G29960 I 0.814
OBART07G08110 Oryza barthii OBART07G08110 I 0.838
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.834
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.828
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.814
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.838
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.838
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.780
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.834
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.828
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.814
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.838
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.838
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.834
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.828
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.814
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.834
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.828
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.844
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.816
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.838
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.799
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.844
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.812
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.828
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.844
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.838
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.834
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.828
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.814
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.838
OS03G0818800 Oryza sativa OS03G0818800 I 0.792
OS05G0121600 Oryza sativa OS05G0121600 I 0.844
OS07G0235800 Oryza sativa OS07G0235800 I 0.838
P93632_MAIZE Zea mays P93632_MAIZE D 0.791
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.834
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.784
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.844
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.844
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.836
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.800
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.813
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.836
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.844
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.836
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.836
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.821
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.844
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.837
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.843
PK02403.1 Cannabis sativa PK02403.1 I 0.836
PK07183.1 Cannabis sativa PK07183.1 I 0.841
PK14490.1 Cannabis sativa PK14490.1 I 0.689
Pm000974 Prunus mume Pm000974 I 0.839
Pm002492 Prunus mume Pm002492 I 0.843
Pm030172 Prunus mume Pm030172 I 0.819
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.828
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.839
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.836
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.826
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.682
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.843
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.819
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.843
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.823
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.837
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.861
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.844
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.818
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.839
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.843
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.836
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.831
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.836
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.834
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.828
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.791
Si006371m.g Setaria italica Si006371m.g I 0.681
Si012635m.g Setaria italica Si012635m.g I 0.828
Si025305m.g Setaria italica Si025305m.g I 0.844
Si029636m.g Setaria italica Si029636m.g I 0.834
Si036068m.g Setaria italica Si036068m.g I 0.836
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.830
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.836
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.837
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.829
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.837
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
TCM_000665 Theobroma cacao TCM_000665 I 0.833
TCM_022077 Theobroma cacao TCM_022077 I 0.843
TCM_042000 Theobroma cacao TCM_042000 I 0.838
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.795
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.855
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.692
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.836
TOE3 Arabidopsis thaliana AT5G67180 I 0.785
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.785
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.838
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.838
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.838
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.701
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.843
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.841