Pavir.Ga00931 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ga00931 T009463_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1E
M09709_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.816 0.920
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN

NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.786 0.900
DREB1G
M09707_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.786 0.900
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.688 0.780
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.688 0.780
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.688 0.780
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.687 0.780
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.687 0.780
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.687 0.780
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.687 0.780
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.687 0.780
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.687 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00931.1.p AP2 39 90

Links

Other AP2 family TFs
Other Panicum virgatum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.725
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.698
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.718
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.716
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.681
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.687
DREB1C Arabidopsis thaliana AT4G25470 D 0.688
DREB1A Arabidopsis thaliana AT4G25480 D 0.687
DREB1D Arabidopsis thaliana AT5G51990 D 0.687
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.683
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.683
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.687
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.772
Bo9g104770 Brassica oleracea Bo9g104770 I 0.687
Bra028290 Brassica rapa Bra028290 I 0.687
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.683
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.687
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.683
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.687
Cla002362 Citrullus lanatus Cla002362 I 0.678
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.687
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.683
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.772
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.816
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.786
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.690
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.683
mgf026642m Mimulus guttatus mgf026642m I 0.681
OBART04G22220 Oryza barthii OBART04G22220 I 0.816
OBART02G27760 Oryza barthii OBART02G27760 I 0.786
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.816
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.816
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.786
DREB1E Oryza indica BGIOSGA016950 I 0.816
DREB1G Oryza indica BGIOSGA008804 I 0.786
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.786
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.816
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.816
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.786
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.786
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.816
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.786
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.816
DREB1G Oryza sativa OS02G0677300 D 0.786
DREB1E Oryza sativa OS04G0572400 D 0.816
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.786
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.786
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.677
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.683
30147.m014313 Ricinus communis 30147.m014313 I 0.683
Si018262m.g Setaria italica Si018262m.g I 0.776
Si011005m.g Setaria italica Si011005m.g I 0.840
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.681
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.678
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.840
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.786
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.840
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.786