TF Information

RAV1 *(Arabidopsis thaliana)* AP2,B3
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2) PF02362 (B3)	IPR001471 IPR003340	AT1G13260	T010404_2.00	Ensembl (2018-Dec-8)	Link out
NCBI Gene Info: Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAV1 M01645_2.00	Arabidopsis thaliana	NNNNVDCABN	NVTGHBNNNN	PBM Weirauch et al.(2014) pTH8249	(Direct)	(Direct)
RAV1 M01646_2.00	Arabidopsis thaliana	NCACCTGAHN	NDTCAGGTGN	PBM Weirauch et al.(2014) pTH8592	(Direct)	(Direct)
RAV1 M02649_2.00	Arabidopsis thaliana	VNSCAACAKWDN	NHWMTGTTGSNB	SELEX Mathelier et al.(2014) MA0582.1	(Direct)	(Direct)
RAV1 M02650_2.00	Arabidopsis thaliana	NHCWCCTGRNNH	DNNYCAGGWGDN	SELEX Mathelier et al.(2014) MA0583.1	(Direct)	(Direct)
RAV1 M06692_2.00	Arabidopsis thaliana	NCAACADAWWHHWHHHKDDNN	NNHHMDDDWDDWWTHTGTTGN	Dap-seq OMalley et al.(2016) RAV1_colamp_a	(Direct)	(Direct)
RAV1 M06693_2.00	Arabidopsis thaliana	VCAACADAWWHHAYNHB	VDNRTDDWWTHTGTTGB	Dap-seq OMalley et al.(2016) RAV1_col	(Direct)	(Direct)
RAV1 M09748_2.00	Arabidopsis thaliana	VNSCAACAKWDN	NHWMTGTTGSNB	Transfac Matys et al.(2006) P$RAV1_01	(Direct)	(Direct)
RAV1 M09749_2.00	Arabidopsis thaliana	NHCWCCTGRNNH	DNNYCAGGWGDN	Transfac Matys et al.(2006) P$RAV1_02	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ARF14 M01648_2.00	Arabidopsis thaliana	RCAACAKA	TMTGTTGY	PBM Weirauch et al.(2014) pTH8727	0.873	0.873
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01645_2.00	AP2	51	100	SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRR
M01646_2.00	B3	81	185	FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT1G13260.1	AP2	60	109	SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRR
AT1G13260.1	B3	188	292	FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS

Links
Other AP2,B3 family TFs
Other *Arabidopsis thaliana* TFs

Invalid Input OrderBy

169 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action