RAV1 (Arabidopsis thaliana)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		AT1G13260 T010404_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01645_2.00		 Arabidopsis thaliana
NNNNVDCABN
NVTGHBNNNN		 PBM
Weirauch et al.(2014)
pTH8249		 (Direct) (Direct)
RAV1
M01646_2.00		 Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592		 (Direct) (Direct)
RAV1
M02649_2.00		 Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1		 (Direct) (Direct)
RAV1
M02650_2.00		 Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1		 (Direct) (Direct)
RAV1
M06692_2.00		 Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a		 (Direct) (Direct)
RAV1
M06693_2.00		 Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col		 (Direct) (Direct)
RAV1
M09748_2.00		 Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01		 (Direct) (Direct)
RAV1
M09749_2.00		 Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.873 0.873
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01645_2.00 AP2 51 100
M01646_2.00 B3 81 185

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G13260.1 AP2 60 109
AT1G13260.1 B3 188 292

Links

Other AP2,B3 family TFs
Other Arabidopsis thaliana TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.993
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.980
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.980
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.980
Bra026917 Brassica rapa Bra026917 I 0.967
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.967
Bra019821 Brassica rapa Bra019821 I 0.960
Bo5g015210 Brassica oleracea Bo5g015210 I 0.960
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.887
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.880
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.880
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.873
Pm029015 Prunus mume Pm029015 I 0.873
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.873
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.873
ARF14 Arabidopsis thaliana AT3G25730 D 0.873
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.867
MDP0000128924 Malus domestica MDP0000128924 I 0.867
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.867
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.860
RAV2 Arabidopsis thaliana AT1G68840 D 0.860
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.860
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.860
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.860
MDP0000939633 Malus domestica MDP0000939633 I 0.860
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.860
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.859
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.853
TCM_011862 Theobroma cacao TCM_011862 I 0.853
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.853
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.853
Bo2g138650 Brassica oleracea Bo2g138650 I 0.853
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.847
PK15652.1 Cannabis sativa PK15652.1 I 0.847
29738.m001050 Ricinus communis 29738.m001050 I 0.847
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.847
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.847
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.847
Bra026509 Brassica rapa Bra026509 I 0.840
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.840
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.840
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.840
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.840
Cla020675 Citrullus lanatus Cla020675 I 0.840
mgf019592m Mimulus guttatus mgf019592m I 0.833
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.833
Ca_24123 Cicer arietinum Ca_24123 I 0.833
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.833
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.833
Bo3g138550 Brassica oleracea Bo3g138550 I 0.833
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.833
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.827
Ca_08436 Cicer arietinum Ca_08436 I 0.827
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.827
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.827
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.820
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.820
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.820
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.820
Bo5g043120 Brassica oleracea Bo5g043120 I 0.813
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.813
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.813
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.813
Bra024735 Brassica rapa Bra024735 I 0.813
Bra038346 Brassica rapa Bra038346 I 0.813
Bra011002 Brassica rapa Bra011002 I 0.813
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.807
Bo2g061320 Brassica oleracea Bo2g061320 I 0.800
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.793
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.788
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.787
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.787
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.785
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.780
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.780
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.780
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.780
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.780
Cla000872 Citrullus lanatus Cla000872 I 0.773
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.773
OS05G0549800 Oryza sativa OS05G0549800 I 0.773
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.767
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.767
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.767
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.767
Si024576m.g Setaria italica Si024576m.g I 0.767
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.767
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.760
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.760
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.760
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OB01G12600 Oryza brachyantha OB01G12600 I 0.753
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.753
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.753
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.753
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.753
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.747
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.747
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.747
Si004045m.g Setaria italica Si004045m.g I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.740
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.740
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.740
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.740
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.740
OS01G0140700 Oryza sativa OS01G0140700 I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.740
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.740
OBART01G02610 Oryza barthii OBART01G02610 I 0.740
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.740
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.740
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.740
OS01G0141000 Oryza sativa OS01G0141000 I 0.740
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.740
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.740
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.740
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.740
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.740
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.740
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.740
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.740
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.740
Si001909m.g Setaria italica Si001909m.g I 0.740
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.733
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.733
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.733
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.727
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.727
Bra025159 Brassica rapa Bra025159 I 0.720
TCM_019508 Theobroma cacao TCM_019508 I 0.720
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.713
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.713
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.713
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.707
MDP0000945267 Malus domestica MDP0000945267 I 0.707
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.700