Bo5g015210 (Brassica oleracea)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bo5g015210 T010415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.960 0.960
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.960 0.960
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.960 0.960
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.960 0.960
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.960 0.960
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.960 0.960
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.853 0.853
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g015210.1 AP2 58 107
Bo5g015210.1 B3 185 289

Links

Other AP2,B3 family TFs
Other Brassica oleracea TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra019821 Brassica rapa Bra019821 I 1.000
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.973
Bra026917 Brassica rapa Bra026917 I 0.967
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.967
RAV1 Arabidopsis thaliana AT1G13260 D 0.960
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.953
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.953
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.947
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.873
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.873
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.873
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.873
Pm029015 Prunus mume Pm029015 I 0.873
MDP0000128924 Malus domestica MDP0000128924 I 0.867
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.867
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.867
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.867
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.866
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.860
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.860
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.860
TCM_011862 Theobroma cacao TCM_011862 I 0.860
RAV2 Arabidopsis thaliana AT1G68840 D 0.860
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.860
MDP0000939633 Malus domestica MDP0000939633 I 0.860
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.860
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.860
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.859
ARF14 Arabidopsis thaliana AT3G25730 D 0.853
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.853
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.853
29738.m001050 Ricinus communis 29738.m001050 I 0.853
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.847
PK15652.1 Cannabis sativa PK15652.1 I 0.847
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.847
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.847
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.847
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.847
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.847
Bo3g138550 Brassica oleracea Bo3g138550 I 0.847
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.840
Bo2g138650 Brassica oleracea Bo2g138650 I 0.840
Cla020675 Citrullus lanatus Cla020675 I 0.840
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.840
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.833
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.833
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.833
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.833
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.833
Ca_24123 Cicer arietinum Ca_24123 I 0.833
Bra024735 Brassica rapa Bra024735 I 0.832
Bra038346 Brassica rapa Bra038346 I 0.827
mgf019592m Mimulus guttatus mgf019592m I 0.827
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.827
Bra026509 Brassica rapa Bra026509 I 0.827
Bra011002 Brassica rapa Bra011002 I 0.827
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.826
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.820
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.820
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.820
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.820
Ca_08436 Cicer arietinum Ca_08436 I 0.820
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.820
Bo5g043120 Brassica oleracea Bo5g043120 I 0.820
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.813
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.813
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.813
Bo2g061320 Brassica oleracea Bo2g061320 I 0.813
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.800
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.799
Bra025159 Brassica rapa Bra025159 I 0.795
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.792
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.788
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.788
OS01G0693400 Oryza sativa OS01G0693400 I 0.781
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.781
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.781
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.781
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.781
OBART01G27360 Oryza barthii OBART01G27360 I 0.781
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.781
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.780
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.780
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.780
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.780
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.779
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.776
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.773
OS05G0549800 Oryza sativa OS05G0549800 I 0.773
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.772
Cla000872 Citrullus lanatus Cla000872 I 0.772
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.770
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.767
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.767
Si024576m.g Setaria italica Si024576m.g I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.767
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.760
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.758
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.758
Si004045m.g Setaria italica Si004045m.g I 0.757
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.753
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.753
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.753
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.753
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.747
OB01G12600 Oryza brachyantha OB01G12600 I 0.747
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.745
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.745
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
TCM_019508 Theobroma cacao TCM_019508 I 0.740
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.740
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.740
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.738
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.738
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.733
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.733
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.733
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.733
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.733
OBART01G02610 Oryza barthii OBART01G02610 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.733
OS01G0140700 Oryza sativa OS01G0140700 I 0.733
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.733
Si001909m.g Setaria italica Si001909m.g I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.731
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.727
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.727
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.727
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.726
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.720
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.720
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
MDP0000945267 Malus domestica MDP0000945267 I 0.713
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.707
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.700