orange1.1g021945m.g (Citrus sinensis)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		orange1.1g021945m.g T010623_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.743 0.743
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.743 0.743
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.743 0.743
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.743 0.743
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.743 0.743
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.743 0.743
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g021945m AP2 31 80
orange1.1g021945m B3 164 266

Links

Other AP2,B3 family TFs
Other Citrus sinensis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.986
TCM_019508 Theobroma cacao TCM_019508 I 0.781
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.780
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.780
Pm029015 Prunus mume Pm029015 I 0.764
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.764
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.764
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.764
PK15652.1 Cannabis sativa PK15652.1 I 0.760
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.760
Pm015500 Prunus mume Pm015500 I 0.760
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.757
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.757
Ca_24123 Cicer arietinum Ca_24123 I 0.757
mgf019592m Mimulus guttatus mgf019592m I 0.757
TCM_011862 Theobroma cacao TCM_011862 I 0.753
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.753
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.753
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.753
MDP0000939633 Malus domestica MDP0000939633 I 0.753
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.752
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.750
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.750
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.750
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.750
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.748
Si024576m.g Setaria italica Si024576m.g I 0.747
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.747
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.747
Ca_08436 Cicer arietinum Ca_08436 I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.747
MDP0000945267 Malus domestica MDP0000945267 I 0.747
MDP0000128924 Malus domestica MDP0000128924 I 0.747
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.745
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.745
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.745
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.743
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.743
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.743
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.743
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.743
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.742
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.740
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.740
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.740
OS01G0693400 Oryza sativa OS01G0693400 I 0.740
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.740
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.740
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.740
29738.m001050 Ricinus communis 29738.m001050 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
Bra019821 Brassica rapa Bra019821 I 0.740
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.740
OBART01G27360 Oryza barthii OBART01G27360 I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.740
Bo5g015210 Brassica oleracea Bo5g015210 I 0.740
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.736
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.736
ARF14 Arabidopsis thaliana AT3G25730 D 0.736
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.736
OS05G0549800 Oryza sativa OS05G0549800 I 0.736
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.736
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.733
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.733
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.733
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.733
RAV1 Arabidopsis thaliana AT1G13260 D 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.733
RAV2 Arabidopsis thaliana AT1G68840 D 0.733
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.730
Bra026509 Brassica rapa Bra026509 I 0.730
Bo3g138550 Brassica oleracea Bo3g138550 I 0.730
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.728
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.727
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.727
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.727
Bo2g138650 Brassica oleracea Bo2g138650 I 0.727
Bo2g061320 Brassica oleracea Bo2g061320 I 0.727
Bra026917 Brassica rapa Bra026917 I 0.727
Bra038346 Brassica rapa Bra038346 I 0.727
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.727
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.727
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.727
Cla020675 Citrullus lanatus Cla020675 I 0.727
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.726
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.725
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.725
Bra024735 Brassica rapa Bra024735 I 0.725
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.723
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.723
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.723
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.723
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.723
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.723
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.723
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.723
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.723
OS01G0140700 Oryza sativa OS01G0140700 I 0.723
OBART01G02610 Oryza barthii OBART01G02610 I 0.723
OB01G12600 Oryza brachyantha OB01G12600 I 0.723
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.722
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.721
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.720
Bo5g043120 Brassica oleracea Bo5g043120 I 0.718
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.718
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.716
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.714
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.714
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.713
Bra011002 Brassica rapa Bra011002 I 0.713
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.711
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.711
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.711
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.709
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.709
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.709
MDP0000153589 Malus domestica MDP0000153589 N 0.709
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.709
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.708
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.705
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.705
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.705
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.705
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.705
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.703
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.703
Si004045m.g Setaria italica Si004045m.g I 0.703
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.703