Bostr.0556s0243 (Boechera stricta)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bostr.0556s0243 T010573_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.940 0.940
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.867 0.867
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.867 0.867
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.867 0.867
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.867 0.867
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.867 0.867
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0556s0243.1.p AP2 55 104
Bostr.0556s0243.1.p B3 183 290

Links

Other AP2,B3 family TFs
Other Boechera stricta TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.946
ARF14 Arabidopsis thaliana AT3G25730 D 0.940
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.927
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.907
Bo2g138650 Brassica oleracea Bo2g138650 I 0.873
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.873
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.867
RAV1 Arabidopsis thaliana AT1G13260 D 0.867
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.867
Bra026509 Brassica rapa Bra026509 I 0.867
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.860
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.853
Bra025159 Brassica rapa Bra025159 I 0.848
Bra026917 Brassica rapa Bra026917 I 0.847
Bo5g015210 Brassica oleracea Bo5g015210 I 0.847
Bra019821 Brassica rapa Bra019821 I 0.847
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.813
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.813
MDP0000128924 Malus domestica MDP0000128924 I 0.807
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.807
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.807
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.800
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.793
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.793
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.793
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.793
MDP0000939633 Malus domestica MDP0000939633 I 0.793
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.793
Pm029015 Prunus mume Pm029015 I 0.793
Cla020675 Citrullus lanatus Cla020675 I 0.793
Ca_08436 Cicer arietinum Ca_08436 I 0.793
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.793
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.793
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.792
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.787
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.787
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.787
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.787
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.787
29738.m001050 Ricinus communis 29738.m001050 I 0.787
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.787
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.787
PK15652.1 Cannabis sativa PK15652.1 I 0.787
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.785
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.780
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.780
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.780
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.780
mgf019592m Mimulus guttatus mgf019592m I 0.780
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.780
RAV2 Arabidopsis thaliana AT1G68840 D 0.780
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.780
TCM_011862 Theobroma cacao TCM_011862 I 0.780
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.780
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.773
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.773
Bra011002 Brassica rapa Bra011002 I 0.773
Cla000872 Citrullus lanatus Cla000872 I 0.772
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.770
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.767
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.767
Ca_24123 Cicer arietinum Ca_24123 I 0.767
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.767
Bo3g138550 Brassica oleracea Bo3g138550 I 0.767
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.762
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.760
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.758
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.758
Bra024735 Brassica rapa Bra024735 I 0.758
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.753
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.753
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.753
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.753
Bo5g043120 Brassica oleracea Bo5g043120 I 0.753
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.748
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.747
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.747
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.747
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.747
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.745
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
OS05G0549800 Oryza sativa OS05G0549800 I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.736
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.733
Bra038346 Brassica rapa Bra038346 I 0.733
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.733
OB01G12600 Oryza brachyantha OB01G12600 I 0.733
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.733
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.733
Si024576m.g Setaria italica Si024576m.g I 0.733
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.733
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.733
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.733
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.733
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.733
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.732
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.727
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.727
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.727
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
OS01G0141000 Oryza sativa OS01G0141000 I 0.727
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.727
Bo2g061320 Brassica oleracea Bo2g061320 I 0.727
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.727
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.727
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.727
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.727
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.727
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.727
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.725
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.725
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.725
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.725
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.723
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.723
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.720
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.720
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.720
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.720
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.720
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.720
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.718
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.713
MDP0000945267 Malus domestica MDP0000945267 I 0.713
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.713
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.713
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.713
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.713
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.713
TCM_019508 Theobroma cacao TCM_019508 I 0.713
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.711
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.707
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.707
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.707
OBART01G02610 Oryza barthii OBART01G02610 I 0.707
Pm015500 Prunus mume Pm015500 I 0.707
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.707
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.707
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.707
OS01G0140700 Oryza sativa OS01G0140700 I 0.707
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.707
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.707
Si001909m.g Setaria italica Si001909m.g I 0.707
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.705
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.705
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.700
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.700