Bra025159 (Brassica rapa)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bra025159 T010424_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.864 0.864
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.818 0.818
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.818 0.818
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.818 0.818
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.818 0.818
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.818 0.818
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025159.1-P AP2 64 113
Bra025159.1-P B3 187 269

Links

Other AP2,B3 family TFs
Other Brassica rapa TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.879
Bra026509 Brassica rapa Bra026509 I 0.864
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.864
ARF14 Arabidopsis thaliana AT3G25730 D 0.864
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.848
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.826
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.826
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.826
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.811
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.811
Bra026917 Brassica rapa Bra026917 I 0.803
Bo5g015210 Brassica oleracea Bo5g015210 I 0.795
Bra019821 Brassica rapa Bra019821 I 0.795
Bo2g138650 Brassica oleracea Bo2g138650 I 0.773
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.772
MDP0000128924 Malus domestica MDP0000128924 I 0.758
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.750
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.750
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.750
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.750
Pm029015 Prunus mume Pm029015 I 0.750
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.750
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.750
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.742
mgf019592m Mimulus guttatus mgf019592m I 0.742
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.742
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.742
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.742
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.742
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.742
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.742
RAV2 Arabidopsis thaliana AT1G68840 D 0.742
TCM_011862 Theobroma cacao TCM_011862 I 0.735
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.735
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.735
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.735
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.735
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.735
Ca_08436 Cicer arietinum Ca_08436 I 0.727
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.727
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.727
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.727
Bo3g138550 Brassica oleracea Bo3g138550 I 0.727
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.720
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.720
RAV1 Arabidopsis thaliana AT1G13260 D 0.720
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.720
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.712
Ca_24123 Cicer arietinum Ca_24123 I 0.712
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.712
Bra024735 Brassica rapa Bra024735 I 0.712
Bo5g043120 Brassica oleracea Bo5g043120 I 0.712
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.712
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.705