cassava43329.valid.m1 (Manihot esculenta)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		cassava43329.valid.m1 T010560_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.873 0.873
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.873 0.873
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.873 0.873
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.873 0.873
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.873 0.873
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.873 0.873
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43329.valid.m1 AP2 66 115
cassava43329.valid.m1 B3 199 303

Links

Other AP2,B3 family TFs
Other Manihot esculenta TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001050 Ricinus communis 29738.m001050 I 0.947
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.946
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.940
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.940
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.940
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.933
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.933
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.927
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.927
Pm029015 Prunus mume Pm029015 I 0.927
TCM_011862 Theobroma cacao TCM_011862 I 0.927
MDP0000128924 Malus domestica MDP0000128924 I 0.927
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.920
MDP0000939633 Malus domestica MDP0000939633 I 0.920
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.913
PK15652.1 Cannabis sativa PK15652.1 I 0.913
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.907
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.907
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.907
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.907
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.907
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.900
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.893
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.887
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.887
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.887
Cla020675 Citrullus lanatus Cla020675 I 0.887
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.880
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.880
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.880
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.880
Ca_24123 Cicer arietinum Ca_24123 I 0.880
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.880
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.873
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.873
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.873
mgf019592m Mimulus guttatus mgf019592m I 0.873
Bra019821 Brassica rapa Bra019821 I 0.873
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.873
RAV1 Arabidopsis thaliana AT1G13260 D 0.873
Bo5g015210 Brassica oleracea Bo5g015210 I 0.873
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.873
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.873
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.873
RAV2 Arabidopsis thaliana AT1G68840 D 0.867
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.867
Bra026917 Brassica rapa Bra026917 I 0.867
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.860
Ca_08436 Cicer arietinum Ca_08436 I 0.860
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.860
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.860
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.860
Bo5g043120 Brassica oleracea Bo5g043120 I 0.853
Bra024735 Brassica rapa Bra024735 I 0.853
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.853
Bo3g138550 Brassica oleracea Bo3g138550 I 0.853
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.853
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.847
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.840
Bra011002 Brassica rapa Bra011002 I 0.840
Bra038346 Brassica rapa Bra038346 I 0.827
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.827
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Bo2g061320 Brassica oleracea Bo2g061320 I 0.820
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.819
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.813
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.813
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.813
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.813
Cla000872 Citrullus lanatus Cla000872 I 0.812
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.812
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
OS05G0549800 Oryza sativa OS05G0549800 I 0.807
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.807
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.807
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.807
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.807
OBART01G27360 Oryza barthii OBART01G27360 I 0.801
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.801
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.801
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.801
OS01G0693400 Oryza sativa OS01G0693400 I 0.801
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.801
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.801
Si024576m.g Setaria italica Si024576m.g I 0.800
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.800
Bo2g138650 Brassica oleracea Bo2g138650 I 0.800
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.800
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.800
ARF14 Arabidopsis thaliana AT3G25730 D 0.800
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.800
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.800
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.793
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.792
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.787
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.787
Bra026509 Brassica rapa Bra026509 I 0.787
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.787
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.780
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.780
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.780
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.780
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.780
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.777
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.773
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.773
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.773
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.773
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.770
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.767
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.767
OB01G12600 Oryza brachyantha OB01G12600 I 0.767
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.767
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.767
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.760
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.760
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.760
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.760
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.760
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.760
Pm015500 Prunus mume Pm015500 I 0.760
Si004045m.g Setaria italica Si004045m.g I 0.760
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.760
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.760
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.760
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.758
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.753
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.753
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.753
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.753
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.753
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.753
Si001909m.g Setaria italica Si001909m.g I 0.753
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.753
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.753
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.747
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.747
MDP0000945267 Malus domestica MDP0000945267 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.747
TCM_019508 Theobroma cacao TCM_019508 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
Bra025159 Brassica rapa Bra025159 I 0.742
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.740
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.738
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.738
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.733
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.733
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.727
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.720
MDP0000321569 Malus domestica MDP0000321569 N 0.713
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.713
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.712
MDP0000153589 Malus domestica MDP0000153589 N 0.707