Solyc04g007000.1 (Solanum lycopersicum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Solyc04g007000.1 T010524_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.778 0.778
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.771 0.771
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.771 0.771
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.771 0.771
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.771 0.771
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.771 0.771
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g007000.1.1 AP2 65 114
Solyc04g007000.1.1 B3 203 307

Links

Other AP2,B3 family TFs
Other Solanum lycopersicum TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.875
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.840
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.833
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.826
TCM_011862 Theobroma cacao TCM_011862 I 0.826
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.819
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.812
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.812
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.799
Pm029015 Prunus mume Pm029015 I 0.799
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.799
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.799
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.799
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.799
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.793
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.793
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.793
MDP0000128924 Malus domestica MDP0000128924 I 0.792
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.792
mgf019592m Mimulus guttatus mgf019592m I 0.792
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.792
PK15652.1 Cannabis sativa PK15652.1 I 0.787
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.787
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.785
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.785
Ca_24123 Cicer arietinum Ca_24123 I 0.785
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.779
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.778
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.778
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.778
ARF14 Arabidopsis thaliana AT3G25730 D 0.778
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.778
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.773
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.773
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.771
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.771
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.771
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.771
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.771
Bo5g043120 Brassica oleracea Bo5g043120 I 0.771
Bo3g138550 Brassica oleracea Bo3g138550 I 0.771
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.771
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.771
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.771
Bra026917 Brassica rapa Bra026917 I 0.771
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
MDP0000939633 Malus domestica MDP0000939633 I 0.767
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
29738.m001050 Ricinus communis 29738.m001050 I 0.767
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.764
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.764
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.764
OS05G0549800 Oryza sativa OS05G0549800 I 0.764
Si024576m.g Setaria italica Si024576m.g I 0.764
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.764
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.764
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.760
Cla020675 Citrullus lanatus Cla020675 I 0.760
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.760
RAV2 Arabidopsis thaliana AT1G68840 D 0.760
TCM_019508 Theobroma cacao TCM_019508 I 0.760
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.758
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.757
Bra026509 Brassica rapa Bra026509 I 0.757
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.757
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.757
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.757
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.757
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.753
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.753
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.753
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.753
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.750
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.750
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.748
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.747
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.747
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.747
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.747
Bra024735 Brassica rapa Bra024735 I 0.745
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.745
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.743
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.743
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.743
OBART01G02610 Oryza barthii OBART01G02610 I 0.743
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.743
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.743
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.743
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.743
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.743
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.743
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.743
Si004045m.g Setaria italica Si004045m.g I 0.743
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.743
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.743
OS01G0140700 Oryza sativa OS01G0140700 I 0.743
OS01G0141000 Oryza sativa OS01G0141000 I 0.743
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.743
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.743
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.743
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.743
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.740
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.740
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.740
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.738
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.738
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.736
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.736
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.736
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.736
Bo5g015210 Brassica oleracea Bo5g015210 I 0.733
Bo2g138650 Brassica oleracea Bo2g138650 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.733
Ca_08436 Cicer arietinum Ca_08436 I 0.733
Bra019821 Brassica rapa Bra019821 I 0.733
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
Bra038346 Brassica rapa Bra038346 I 0.733
Cla000872 Citrullus lanatus Cla000872 I 0.732
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.732
OB01G12600 Oryza brachyantha OB01G12600 I 0.729
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.729
Bra011002 Brassica rapa Bra011002 I 0.727
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.726
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.725
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.725
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.725
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.722
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.720
Bo2g061320 Brassica oleracea Bo2g061320 I 0.720
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.718
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.715
Si001909m.g Setaria italica Si001909m.g I 0.715
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.714
Pm015500 Prunus mume Pm015500 I 0.713
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.711
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.708
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.708
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.708
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.708
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.708
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.707
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.706
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.705
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.703
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.701
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.701