MDP0000939633 (Malus domestica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		MDP0000939633 T010619_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.860 0.860
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.860 0.860
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.860 0.860
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.860 0.860
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.860 0.860
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.860 0.860
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000939633 AP2 76 125
MDP0000939633 B3 207 320

Links

Other AP2,B3 family TFs
Other Malus domestica TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.960
MDP0000128924 Malus domestica MDP0000128924 I 0.960
Pm029015 Prunus mume Pm029015 I 0.960
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.947
TCM_011862 Theobroma cacao TCM_011862 I 0.920
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.920
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.913
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.907
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.907
29738.m001050 Ricinus communis 29738.m001050 I 0.907
PK15652.1 Cannabis sativa PK15652.1 I 0.907
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.906
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.900
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.893
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.893
Ca_24123 Cicer arietinum Ca_24123 I 0.893
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.893
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.893
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.893
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.893
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.887
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.887
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.880
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.880
Cla020675 Citrullus lanatus Cla020675 I 0.880
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.880
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.873
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.873
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.873
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.873
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.873
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.867
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.867
mgf019592m Mimulus guttatus mgf019592m I 0.867
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.867
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.867
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.867
Bo5g015210 Brassica oleracea Bo5g015210 I 0.860
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.860
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.860
RAV1 Arabidopsis thaliana AT1G13260 D 0.860
Bra019821 Brassica rapa Bra019821 I 0.860
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.853
Bra026917 Brassica rapa Bra026917 I 0.853
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.853
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.853
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.853
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.853
Ca_08436 Cicer arietinum Ca_08436 I 0.853
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.847
RAV2 Arabidopsis thaliana AT1G68840 D 0.847
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.847
Bra024735 Brassica rapa Bra024735 I 0.840
Bo5g043120 Brassica oleracea Bo5g043120 I 0.840
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.840
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.840
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.840
Bo3g138550 Brassica oleracea Bo3g138550 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
Bra011002 Brassica rapa Bra011002 I 0.820
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.820
Bra038346 Brassica rapa Bra038346 I 0.820
Bo2g061320 Brassica oleracea Bo2g061320 I 0.813
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.813
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.813
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.813
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.807
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.807
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.807
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.807
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.807
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.807
Si024576m.g Setaria italica Si024576m.g I 0.800
OS05G0549800 Oryza sativa OS05G0549800 I 0.800
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.800
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.800
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.800
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.800
ARF14 Arabidopsis thaliana AT3G25730 D 0.793
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.793
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.793
Cla000872 Citrullus lanatus Cla000872 I 0.793
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.793
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.793
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.793
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.792
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.787
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.787
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.787
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.787
OS01G0693400 Oryza sativa OS01G0693400 I 0.787
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.787
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.787
OBART01G27360 Oryza barthii OBART01G27360 I 0.787
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.787
Bo2g138650 Brassica oleracea Bo2g138650 I 0.787
OB01G12600 Oryza brachyantha OB01G12600 I 0.780
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.780
Bra026509 Brassica rapa Bra026509 I 0.780
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.778
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.773
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.773
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.773
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.773
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.773
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.773
Si004045m.g Setaria italica Si004045m.g I 0.773
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.773
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.767
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.767
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.767
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.767
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.760
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.760
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.760
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.760
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.760
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.760
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.760
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.760
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.760
OBART01G02610 Oryza barthii OBART01G02610 I 0.760
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.760
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.760
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.760
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.760
OS01G0140700 Oryza sativa OS01G0140700 I 0.760
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.760
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.753
Pm015500 Prunus mume Pm015500 I 0.753
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.753
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
Si001909m.g Setaria italica Si001909m.g I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.747
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.740
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.740
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.740
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.740
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
TCM_019508 Theobroma cacao TCM_019508 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.733
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.733
MDP0000945267 Malus domestica MDP0000945267 I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.720
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.720
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.713
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.707
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.707
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.700
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.700