ONIVA05G26000 (Oryza nivara)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		ONIVA05G26000 T010482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.772 0.772
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.772 0.772
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.772 0.772
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.772 0.772
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.772 0.772
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.772 0.772
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.738 0.738
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA05G26000.1 AP2 67 116
ONIVA05G26000.1 B3 193 313

Links

Other AP2,B3 family TFs
Other Oryza nivara TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA020315 Oryza indica BGIOSGA020315 I 1.000
OS05G0549800 Oryza sativa OS05G0549800 I 0.987
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.980
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.980
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.973
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.918
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.911
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.906
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.899
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.899
Si024576m.g Setaria italica Si024576m.g I 0.893
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.891
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.884
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.884
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.884
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.884
OBART01G27360 Oryza barthii OBART01G27360 I 0.884
OS01G0693400 Oryza sativa OS01G0693400 I 0.884
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.884
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.884
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.879
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.872
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.859
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.846
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.839
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.833
Si004045m.g Setaria italica Si004045m.g I 0.831
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.826
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.819
Pm029015 Prunus mume Pm029015 I 0.819
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.819
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.813
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.805
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.805
MDP0000128924 Malus domestica MDP0000128924 I 0.805
PK15652.1 Cannabis sativa PK15652.1 I 0.800
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.800
Ca_24123 Cicer arietinum Ca_24123 I 0.799
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.799
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.799
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.793
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.793
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.793
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.793
MDP0000939633 Malus domestica MDP0000939633 I 0.793
29738.m001050 Ricinus communis 29738.m001050 I 0.793
Ca_08436 Cicer arietinum Ca_08436 I 0.793
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.792
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.792
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.792
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.792
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.792
TCM_011862 Theobroma cacao TCM_011862 I 0.792
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.792
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.787
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.787
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.785
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.785
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.785
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.785
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.785
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.785
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.780
RAV2 Arabidopsis thaliana AT1G68840 D 0.780
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.779
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.779
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.779
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.779
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.779
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.773
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.773
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.773
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.773
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.773
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.773
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.773
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.772
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.772
Bra026917 Brassica rapa Bra026917 I 0.772
mgf019592m Mimulus guttatus mgf019592m I 0.772
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.770
Bo5g015210 Brassica oleracea Bo5g015210 I 0.767
RAV1 Arabidopsis thaliana AT1G13260 D 0.767
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.767
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
Cla020675 Citrullus lanatus Cla020675 I 0.767
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.767
Bra019821 Brassica rapa Bra019821 I 0.767
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.767
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.767
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.765
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.765
Bo3g138550 Brassica oleracea Bo3g138550 I 0.765
OB01G12600 Oryza brachyantha OB01G12600 I 0.764
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
Bra011002 Brassica rapa Bra011002 I 0.760
Bo5g043120 Brassica oleracea Bo5g043120 I 0.758
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.758
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.758
Bra024735 Brassica rapa Bra024735 I 0.758
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.758
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.758
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.758
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.757
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.752
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.752
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.752
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.750
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.747
Bra038346 Brassica rapa Bra038346 I 0.747
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.746
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.745
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.745
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.745
OS01G0140700 Oryza sativa OS01G0140700 I 0.745
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.745
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.745
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.745
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.745
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.745
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.745
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.745
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.745
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.745
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.745
OBART01G02610 Oryza barthii OBART01G02610 I 0.745
Cla000872 Citrullus lanatus Cla000872 I 0.745
Si001909m.g Setaria italica Si001909m.g I 0.745
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.742
Bo2g061320 Brassica oleracea Bo2g061320 I 0.740
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.738
ARF14 Arabidopsis thaliana AT3G25730 D 0.738
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.738
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.738
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.735
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.735
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
Bo2g138650 Brassica oleracea Bo2g138650 I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.732
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.732
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.732
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.732
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.732
OS01G0141000 Oryza sativa OS01G0141000 I 0.732
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.727
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.725
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.725
Bra026509 Brassica rapa Bra026509 I 0.725
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.725
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.725
TCM_019508 Theobroma cacao TCM_019508 I 0.719
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.718
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.716
Pm015500 Prunus mume Pm015500 I 0.713
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.707
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.700