Sb03g031860 (Sorghum bicolor)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Sb03g031860 T010510_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.778 0.778
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.778 0.778
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.778 0.778
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.778 0.778
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.778 0.778
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.778 0.778
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g031860.1 AP2 80 129
Sb03g031860.1 B3 222 326

Links

Other AP2,B3 family TFs
Other Sorghum bicolor TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.946
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.925
OBART01G27360 Oryza barthii OBART01G27360 I 0.925
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.925
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.925
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.925
OS01G0693400 Oryza sativa OS01G0693400 I 0.925
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.925
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.918
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.918
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.917
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.889
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.889
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.886
Si004045m.g Setaria italica Si004045m.g I 0.885
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.885
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.884
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.882
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.875
OS05G0549800 Oryza sativa OS05G0549800 I 0.868
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.856
Si024576m.g Setaria italica Si024576m.g I 0.849
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.849
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.839
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.839
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.837
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.833
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.826
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.819
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.806
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.799
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.792
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.782
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.780
MDP0000128924 Malus domestica MDP0000128924 I 0.780
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.778
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.777
PK15652.1 Cannabis sativa PK15652.1 I 0.773
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.771
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.771
OS01G0140700 Oryza sativa OS01G0140700 I 0.771
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.771
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.771
OBART01G02610 Oryza barthii OBART01G02610 I 0.771
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.771
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.771
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.771
ARF14 Arabidopsis thaliana AT3G25730 D 0.771
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.771
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.767
MDP0000939633 Malus domestica MDP0000939633 I 0.767
mgf019592m Mimulus guttatus mgf019592m I 0.767
Pm029015 Prunus mume Pm029015 I 0.767
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.765
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.765
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.764
Bo3g138550 Brassica oleracea Bo3g138550 I 0.764
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.764
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.760
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.760
Ca_24123 Cicer arietinum Ca_24123 I 0.760
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.760
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.760
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.760
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.757
OB01G12600 Oryza brachyantha OB01G12600 I 0.757
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.755
Cla020675 Citrullus lanatus Cla020675 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.753
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.753
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.753
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.753
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.753
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.753
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.753
29738.m001050 Ricinus communis 29738.m001050 I 0.753
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.752
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.752
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.748
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.747
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.747
RAV1 Arabidopsis thaliana AT1G13260 D 0.747
Bra011002 Brassica rapa Bra011002 I 0.747
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.747
Bra019821 Brassica rapa Bra019821 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
Bra026917 Brassica rapa Bra026917 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.747
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
TCM_011862 Theobroma cacao TCM_011862 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.747
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.747
Bo5g015210 Brassica oleracea Bo5g015210 I 0.747
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.747
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.747
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.746
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.746
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.745
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.745
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.740
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.740
Ca_08436 Cicer arietinum Ca_08436 I 0.740
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.740
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.740
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.740
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.738
Bo5g043120 Brassica oleracea Bo5g043120 I 0.738
Cla000872 Citrullus lanatus Cla000872 I 0.738
Bra024735 Brassica rapa Bra024735 I 0.738
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
RAV2 Arabidopsis thaliana AT1G68840 D 0.733
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.733
Si001909m.g Setaria italica Si001909m.g I 0.733
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.732
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.732
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.732
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.732
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.728
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.728
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.727
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.723
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.721
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.720
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.720
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.720
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.720
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.718
Si012228m.g Setaria italica Si012228m.g N 0.718
Bra038346 Brassica rapa Bra038346 I 0.713
Bo2g061320 Brassica oleracea Bo2g061320 I 0.713
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.709
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
TCM_019508 Theobroma cacao TCM_019508 I 0.705
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.702
Bo2g138650 Brassica oleracea Bo2g138650 I 0.700