Pavir.Ca01165 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.Ca01165 T010625_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.731 0.731
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.731 0.731
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.731 0.731
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.731 0.731
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.731 0.731
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.731 0.731
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01165.1.p AP2 18 67
Pavir.Ca01165.1.p B3 132 218

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.960
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.838
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.838
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.838
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.838
OS01G0141000 Oryza sativa OS01G0141000 I 0.838
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.838
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.838
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.831
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.831
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.831
Si001909m.g Setaria italica Si001909m.g I 0.823
OB01G12600 Oryza brachyantha OB01G12600 I 0.823
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.823
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.815
OBART01G02610 Oryza barthii OBART01G02610 I 0.815
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.815
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.815
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.815
OS01G0140700 Oryza sativa OS01G0140700 I 0.815
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.815
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.815
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.808
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.808
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.800
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.800
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.800
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.800
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.792
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.792
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.792
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.792
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.792
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.785
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.785
Si004045m.g Setaria italica Si004045m.g I 0.785
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.777
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.777
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.777
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.777
MDP0000128924 Malus domestica MDP0000128924 I 0.777
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.777
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.777
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.773
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.769
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.769
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.769
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.769
Si024576m.g Setaria italica Si024576m.g I 0.769
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.769
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.769
F775_20035 Aegilops tauschii F775_20035 N 0.762
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.762
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.762
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.762
OS05G0549800 Oryza sativa OS05G0549800 I 0.754
Pm029015 Prunus mume Pm029015 I 0.754
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.754
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.754
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.754
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.754
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.754
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.754
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.754
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.754
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.754
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.746
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.746
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.746
Si012228m.g Setaria italica Si012228m.g N 0.746
Ca_24123 Cicer arietinum Ca_24123 I 0.746
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.746
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.738
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.738
Ca_08436 Cicer arietinum Ca_08436 I 0.738
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.738
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.738
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.738
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.738
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.738
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.738
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.738
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.738
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.738
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.731
Bra019821 Brassica rapa Bra019821 I 0.731
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.731
Bo5g015210 Brassica oleracea Bo5g015210 I 0.731
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.731
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.731
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.731
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.731
ARF14 Arabidopsis thaliana AT3G25730 D 0.731
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.731
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.731
Bra026509 Brassica rapa Bra026509 I 0.723
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.723
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.723
mgf019592m Mimulus guttatus mgf019592m I 0.723
Bra026917 Brassica rapa Bra026917 I 0.723
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.723
RAV2 Arabidopsis thaliana AT1G68840 D 0.723
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.723
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.723
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.723
TCM_011862 Theobroma cacao TCM_011862 I 0.723
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.719
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.715
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.715
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.715
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.715
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.708
Pm015500 Prunus mume Pm015500 I 0.708
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.708
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.708
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.708
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.708
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.700
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.700
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.700
Bo3g138550 Brassica oleracea Bo3g138550 I 0.700
Bra038346 Brassica rapa Bra038346 I 0.700
Bra024735 Brassica rapa Bra024735 I 0.700
Bo5g043120 Brassica oleracea Bo5g043120 I 0.700
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.700
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.700