Thhalv10019566m.g (Eutrema salsugineum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Thhalv10019566m.g T010644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.860 0.860
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.860 0.860
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.860 0.860
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.860 0.860
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.860 0.860
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.860 0.860
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019566m AP2 64 113
Thhalv10019566m B3 184 292

Links

Other AP2,B3 family TFs
Other Eutrema salsugineum TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.973
RAV2 Arabidopsis thaliana AT1G68840 D 0.967
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.967
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.940
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.940
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.933
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.920
Bra038346 Brassica rapa Bra038346 I 0.913
Bra011002 Brassica rapa Bra011002 I 0.913
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.907
Bo5g043120 Brassica oleracea Bo5g043120 I 0.899
Bra024735 Brassica rapa Bra024735 I 0.899
Bo2g061320 Brassica oleracea Bo2g061320 I 0.893
Bo3g138550 Brassica oleracea Bo3g138550 I 0.893
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.880
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.880
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.879
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.879
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.873
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.873
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.873
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.873
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.873
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.873
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.867
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.867
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.867
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.867
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.867
29738.m001050 Ricinus communis 29738.m001050 I 0.860
MDP0000128924 Malus domestica MDP0000128924 I 0.860
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.860
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.860
Bra019821 Brassica rapa Bra019821 I 0.860
Bra026917 Brassica rapa Bra026917 I 0.860
Ca_24123 Cicer arietinum Ca_24123 I 0.860
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.860
Bo5g015210 Brassica oleracea Bo5g015210 I 0.860
RAV1 Arabidopsis thaliana AT1G13260 D 0.860
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.859
TCM_011862 Theobroma cacao TCM_011862 I 0.853
Ca_08436 Cicer arietinum Ca_08436 I 0.853
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.853
MDP0000939633 Malus domestica MDP0000939633 I 0.853
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.853
Pm029015 Prunus mume Pm029015 I 0.853
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.853
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.853
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.852
mgf019592m Mimulus guttatus mgf019592m I 0.847
PK15652.1 Cannabis sativa PK15652.1 I 0.847
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.847
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.847
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.845
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.840
Cla020675 Citrullus lanatus Cla020675 I 0.840
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.840
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.833
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.833
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.833
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.823
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.820
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.817
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.813
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.801
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.801
Si024576m.g Setaria italica Si024576m.g I 0.801
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.800
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.799
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.799
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.799
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.796
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.796
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.793
Bo2g138650 Brassica oleracea Bo2g138650 I 0.793
Cla000872 Citrullus lanatus Cla000872 I 0.792
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.792
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.785
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.785
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.785
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.781
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.780
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.780
ARF14 Arabidopsis thaliana AT3G25730 D 0.780
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.780
Bra026509 Brassica rapa Bra026509 I 0.780
OS05G0549800 Oryza sativa OS05G0549800 I 0.779
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.778
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.776
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.773
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.773
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.772
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.772
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.772
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.771
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.767
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.767
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.765
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.764
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.764
OB01G12600 Oryza brachyantha OB01G12600 I 0.764
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.762
Si001909m.g Setaria italica Si001909m.g I 0.760
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.758
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.757
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.753
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.753
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.753
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.752
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.750
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.750
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.750
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.748
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.748
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.747
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.746
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.745
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.745
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.745
Si004045m.g Setaria italica Si004045m.g I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
Bra025159 Brassica rapa Bra025159 I 0.742
Pm015500 Prunus mume Pm015500 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
TCM_019508 Theobroma cacao TCM_019508 I 0.740
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
MDP0000945267 Malus domestica MDP0000945267 I 0.740
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.738
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.736
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.735
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.727
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.727
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.727
OS01G0141000 Oryza sativa OS01G0141000 I 0.727
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.727
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.727
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.727
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.715
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.707
MDP0000153589 Malus domestica MDP0000153589 N 0.707
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.705
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.700