Bo2g061320 (Brassica oleracea)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bo2g061320 T010411_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.800 0.800
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.800 0.800
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.800 0.800
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.800 0.800
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.800 0.800
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.800 0.800
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g061320.1 AP2 64 113
Bo2g061320.1 B3 183 286

Links

Other AP2,B3 family TFs
Other Brassica oleracea TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra038346 Brassica rapa Bra038346 I 0.960
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.893
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.893
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.887
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.880
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.880
RAV2 Arabidopsis thaliana AT1G68840 D 0.873
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.873
Bra024735 Brassica rapa Bra024735 I 0.873
Bo5g043120 Brassica oleracea Bo5g043120 I 0.867
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.867
Bra011002 Brassica rapa Bra011002 I 0.867
Bo3g138550 Brassica oleracea Bo3g138550 I 0.860
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.853
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.847
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.847
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.833
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.833
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.833
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.832
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.820
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.820
Pm029015 Prunus mume Pm029015 I 0.820
29738.m001050 Ricinus communis 29738.m001050 I 0.820
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.820
MDP0000939633 Malus domestica MDP0000939633 I 0.813
Bo5g015210 Brassica oleracea Bo5g015210 I 0.813
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.813
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.813
TCM_011862 Theobroma cacao TCM_011862 I 0.813
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.813
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.813
Bra019821 Brassica rapa Bra019821 I 0.813
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.813
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.813
Bra026917 Brassica rapa Bra026917 I 0.807
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.807
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.807
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.807
mgf019592m Mimulus guttatus mgf019592m I 0.807
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.807
Ca_24123 Cicer arietinum Ca_24123 I 0.807
Ca_08436 Cicer arietinum Ca_08436 I 0.807
MDP0000128924 Malus domestica MDP0000128924 I 0.807
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.807
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.800
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.800
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.800
PK15652.1 Cannabis sativa PK15652.1 I 0.800
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.800
RAV1 Arabidopsis thaliana AT1G13260 D 0.800
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.800
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.800
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.800
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.793
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.793
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.787
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.787
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.780
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.780
Cla020675 Citrullus lanatus Cla020675 I 0.780
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.772
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.767
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.760
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.760
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.760
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.753
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.753
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.753
Cla000872 Citrullus lanatus Cla000872 I 0.753
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.753
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.747
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.747
Si024576m.g Setaria italica Si024576m.g I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.747
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.747
Bo2g138650 Brassica oleracea Bo2g138650 I 0.747
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.747
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.747
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.747
OS01G0693400 Oryza sativa OS01G0693400 I 0.747
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.747
OS05G0549800 Oryza sativa OS05G0549800 I 0.747
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.740
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.740
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.740
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.740
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.740
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.733
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.733
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.733
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.733
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.733
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
OB01G12600 Oryza brachyantha OB01G12600 I 0.733
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.733
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.733
Bra026509 Brassica rapa Bra026509 I 0.733
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.727
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.727
ARF14 Arabidopsis thaliana AT3G25730 D 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.725
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.720
Si001909m.g Setaria italica Si001909m.g I 0.720
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.720
Si004045m.g Setaria italica Si004045m.g I 0.720
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.720
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.720
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.713
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.713
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.713
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.713
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.713
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.713
OBART01G02610 Oryza barthii OBART01G02610 I 0.713
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.713
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.713
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.713
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.713
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.713
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.713
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.713
OS01G0140700 Oryza sativa OS01G0140700 I 0.713
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.712
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.711
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.707
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.707
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.707
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.707
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.707
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.707
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.707
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.707
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.707
TCM_019508 Theobroma cacao TCM_019508 I 0.707
OS01G0141000 Oryza sativa OS01G0141000 I 0.707
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.707
MDP0000945267 Malus domestica MDP0000945267 I 0.707
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.707
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.707
MDP0000153589 Malus domestica MDP0000153589 N 0.707
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.707
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.700
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.700