PGSC0003DMG400007458 (Solanum tuberosum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		PGSC0003DMG400007458 T010498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.753 0.753
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.753 0.753
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.753 0.753
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.753 0.753
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.753 0.753
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.753 0.753
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400019296 AP2 62 111
PGSC0003DMT400019296 B3 201 308

Links

Other AP2,B3 family TFs
Other Solanum tuberosum TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.875
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.815
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.813
Pm029015 Prunus mume Pm029015 I 0.808
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.808
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.808
Ca_24123 Cicer arietinum Ca_24123 I 0.808
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.801
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.801
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.795
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.795
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.795
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.793
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.788
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.788
TCM_011862 Theobroma cacao TCM_011862 I 0.787
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.781
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.780
Cla020675 Citrullus lanatus Cla020675 I 0.780
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.780
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
29738.m001050 Ricinus communis 29738.m001050 I 0.780
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.780
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.780
mgf019592m Mimulus guttatus mgf019592m I 0.774
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.774
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.774
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.774
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.773
MDP0000939633 Malus domestica MDP0000939633 I 0.773
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.770
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.767
PK15652.1 Cannabis sativa PK15652.1 I 0.767
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.767
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.767
MDP0000128924 Malus domestica MDP0000128924 I 0.767
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.767
Si024576m.g Setaria italica Si024576m.g I 0.767
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.767
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.766
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.765
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.762
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.760
RAV2 Arabidopsis thaliana AT1G68840 D 0.760
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.760
Bo3g138550 Brassica oleracea Bo3g138550 I 0.760
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.760
Cla000872 Citrullus lanatus Cla000872 I 0.758
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.753
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.753
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.748
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.747
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.747
OS01G0693400 Oryza sativa OS01G0693400 I 0.747
ARF14 Arabidopsis thaliana AT3G25730 D 0.747
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.747
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.747
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.747
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.747
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.747
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.747
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.747
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.747
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.747
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.745
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.745
Bra024735 Brassica rapa Bra024735 I 0.745
Bo5g043120 Brassica oleracea Bo5g043120 I 0.745
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.745
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.743
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.743
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.742
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.740
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.740
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.740
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.740
OS05G0549800 Oryza sativa OS05G0549800 I 0.740
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.740
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.740
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.740
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.738
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.735
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.735
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
Bra026917 Brassica rapa Bra026917 I 0.733
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
Ca_08436 Cicer arietinum Ca_08436 I 0.733
RAV1 Arabidopsis thaliana AT1G13260 D 0.733
Bo2g138650 Brassica oleracea Bo2g138650 I 0.727
Bo5g015210 Brassica oleracea Bo5g015210 I 0.727
Bra019821 Brassica rapa Bra019821 I 0.727
Bra038346 Brassica rapa Bra038346 I 0.727
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.727
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.726
TCM_019508 Theobroma cacao TCM_019508 I 0.726
Bra026509 Brassica rapa Bra026509 I 0.726
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.725
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.725
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.720
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.718
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.718
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.718
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.714
Bo2g061320 Brassica oleracea Bo2g061320 I 0.713
Si001909m.g Setaria italica Si001909m.g I 0.713
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.713
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.713
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.713
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.713
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.712
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.712
OS01G0140700 Oryza sativa OS01G0140700 I 0.712
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.712
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.712
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.712
OBART01G02610 Oryza barthii OBART01G02610 I 0.712
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.712
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.712
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.711
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.711
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.711
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.711
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.711
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.707
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.707
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.705
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.705
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.705
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.705
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.705
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.701
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700
Pm015500 Prunus mume Pm015500 I 0.700