CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RAV1
(
Arabidopsis lyrata
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
scaffold_101479.1
T010513_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.993
0.993
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.993
0.993
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.993
0.993
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.993
0.993
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.993
0.993
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.993
0.993
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA
TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.880
0.880
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_101479.1
AP2
60
109
SKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRGR
scaffold_101479.1
B3
188
292
FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS
Links
Other
AP2,B3
family TFs
Other
Arabidopsis lyrata
TFs
172 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
RAV1
Arabidopsis thaliana
AT1G13260
D
0.993
Cagra.3501s0173
Capsella grandiflora
Cagra.3501s0173
I
0.987
Carubv10009612m.g
Capsella rubella
Carubv10009612m.g
I
0.987
Thhalv10010019m.g
Eutrema salsugineum
Thhalv10010019m.g
I
0.987
Bra026917
Brassica rapa
Bra026917
I
0.973
Bostr.13671s0120
Boechera stricta
Bostr.13671s0120
I
0.973
Bra019821
Brassica rapa
Bra019821
I
0.967
Bo5g015210
Brassica oleracea
Bo5g015210
I
0.967
Carubv10019207m.g
Capsella rubella
Carubv10019207m.g
I
0.893
EDF3
Arabidopsis lyrata
fgenesh2_kg.5__327__AT3G25730.1
I
0.893
Thhalv10004508m.g
Eutrema salsugineum
Thhalv10004508m.g
I
0.887
gene03871-v1.0-hybrid
Fragaria vesca
gene03871-v1.0-hybrid
I
0.880
cassava43329.valid.m1
Manihot esculenta
cassava43329.valid.m1
I
0.880
Pm029015
Prunus mume
Pm029015
I
0.880
PRUPE_ppa006243mg
Prunus persica
PRUPE_ppa006243mg
I
0.880
ARF14
Arabidopsis thaliana
AT3G25730
D
0.880
Bostr.0556s0243
Boechera stricta
Bostr.0556s0243
I
0.873
MDP0000128924
Malus domestica
MDP0000128924
I
0.873
Carubv10020536m.g
Capsella rubella
Carubv10020536m.g
I
0.873
Cagra.1157s0007
Capsella grandiflora
Cagra.1157s0007
I
0.867
SapurV1A.3302s0010
Salix purpurea
SapurV1A.3302s0010
I
0.867
SapurV1A.1001s0020
Salix purpurea
SapurV1A.1001s0020
I
0.867
RAV2
Arabidopsis thaliana
AT1G68840
D
0.867
RAV2
Arabidopsis lyrata
fgenesh2_kg.2__1141__AT1G68840.1
I
0.867
MDP0000939633
Malus domestica
MDP0000939633
I
0.867
Thhalv10019566m.g
Eutrema salsugineum
Thhalv10019566m.g
I
0.867
POPTR_0010s13930
Populus trichocarpa
POPTR_0010s13930
I
0.866
orange1.1g017035m.g
Citrus sinensis
orange1.1g017035m.g
I
0.860
TCM_011862
Theobroma cacao
TCM_011862
I
0.860
Bostr.10273s0485
Boechera stricta
Bostr.10273s0485
I
0.860
Bo2g138650
Brassica oleracea
Bo2g138650
I
0.860
Ciclev10031846m.g
Citrus clementina
Ciclev10031846m.g
I
0.860
GLYMA02G11060
Glycine max
GLYMA02G11060
I
0.853
29738.m001050
Ricinus communis
29738.m001050
I
0.853
GLYMA01G22260
Glycine max
GLYMA01G22260
I
0.853
PK15652.1
Cannabis sativa
PK15652.1
I
0.853
Gorai.008G185900
Gossypium raimondii
Gorai.008G185900
I
0.853
POPTR_0008s11600
Populus trichocarpa
POPTR_0008s11600
I
0.853
SapurV1A.0079s0450
Salix purpurea
SapurV1A.0079s0450
I
0.853
cassava12324.valid.m1
Manihot esculenta
cassava12324.valid.m1
I
0.847
GSMUA_Achr5G09950_001
Musa acuminata
GSMUA_Achr5G09950_001
I
0.847
MTR_1g093600
Medicago truncatula
MTR_1g093600
I
0.847
Cucsa.283870
Cucumis sativus
Cucsa.283870
I
0.847
Cla020675
Citrullus lanatus
Cla020675
I
0.847
Bra026509
Brassica rapa
Bra026509
I
0.847
Gorai.013G080000
Gossypium raimondii
Gorai.013G080000
I
0.840
PGSC0003DMG400000811
Solanum tuberosum
PGSC0003DMG400000811
I
0.840
TEM1
Arabidopsis lyrata
scaffold_102941.1
I
0.840
Ca_24123
Cicer arietinum
Ca_24123
I
0.840
GLYMA20G32730
Glycine max
GLYMA20G32730
I
0.840
mgf019592m
Mimulus guttatus
mgf019592m
I
0.840
Bo3g138550
Brassica oleracea
Bo3g138550
I
0.840
GLYMA10G34760
Glycine max
GLYMA10G34760
I
0.839
Gorai.005G138100
Gossypium raimondii
Gorai.005G138100
I
0.833
Ca_08436
Cicer arietinum
Ca_08436
I
0.833
Bostr.12659s0398
Boechera stricta
Bostr.12659s0398
I
0.833
Lus10041487.g
Linum usitatissimum
Lus10041487.g
I
0.827
Eucgr.B03048
Eucalyptus grandis
Eucgr.B03048
I
0.827
Solyc05g009790.1
Solanum lycopersicum
Solyc05g009790.1
I
0.827
VIT_01s0011g03070
Vitis vinifera
VIT_01s0011g03070
I
0.827
Bo5g043120
Brassica oleracea
Bo5g043120
I
0.826
Bra025159
Brassica rapa
Bra025159
I
0.826
Bra024735
Brassica rapa
Bra024735
I
0.826
MTR_5g053920
Medicago truncatula
MTR_5g053920
I
0.820
Bra011002
Brassica rapa
Bra011002
I
0.820
Thhalv10007983m.g
Eutrema salsugineum
Thhalv10007983m.g
I
0.820
Bra038346
Brassica rapa
Bra038346
I
0.820
Aquca_026_00225
Aquilegia coerulea
Aquca_026_00225
I
0.820
Aquca_002_01106
Aquilegia coerulea
Aquca_002_01106
I
0.813
Bo2g061320
Brassica oleracea
Bo2g061320
I
0.807
AMTR_s00007p00238950
Amborella trichopoda
AMTR_s00007p00238950
I
0.800
Sb09g027530
Sorghum bicolor
Sb09g027530
I
0.799
GRMZM2G059939
Zea mays
GRMZM2G059939
I
0.799
Pavir.J13012
Panicum virgatum
Pavir.J13012
I
0.795
Pavir.Ca01826
Panicum virgatum
Pavir.Ca01826
I
0.795
Lus10021707.g
Linum usitatissimum
Lus10021707.g
I
0.792
OS01G0693400
Oryza sativa
OS01G0693400
I
0.788
ORUFI01G30390
Oryza rufipogon
ORUFI01G30390
I
0.788
ONIVA01G31290
Oryza nivara
ONIVA01G31290
I
0.788
OMERI01G25110
Oryza meridionalis
OMERI01G25110
I
0.788
OPUNC01G27280
Oryza punctata
OPUNC01G27280
I
0.788
OBART01G27360
Oryza barthii
OBART01G27360
I
0.788
ORGLA01G0225300
Oryza glaberrima
ORGLA01G0225300
I
0.788
GSMUA_Achr4G06710_001
Musa acuminata
GSMUA_Achr4G06710_001
I
0.787
OGLUM05G26380
Oryza glumaepatula
OGLUM05G26380
I
0.787
OMERI05G22110
Oryza meridionalis
OMERI05G22110
I
0.787
OPUNC05G22370
Oryza punctata
OPUNC05G22370
I
0.787
Cla000872
Citrullus lanatus
Cla000872
I
0.785
Cucsa.147340
Cucumis sativus
Cucsa.147340
I
0.784
BRADI2G47220
Brachypodium distachyon
BRADI2G47220
I
0.782
GSMUA_Achr6G01420_001
Musa acuminata
GSMUA_Achr6G01420_001
I
0.780
GRMZM2G169654
Zea mays
GRMZM2G169654
I
0.780
OS05G0549800
Oryza sativa
OS05G0549800
I
0.780
ONIVA05G26000
Oryza nivara
ONIVA05G26000
I
0.779
BGIOSGA020315
Oryza indica
BGIOSGA020315
I
0.779
Solyc04g007000.1
Solanum lycopersicum
Solyc04g007000.1
I
0.778
LPERR01G23470
Leersia perrieri
LPERR01G23470
I
0.776
VIT_14s0083g00130
Vitis vinifera
VIT_14s0083g00130
I
0.773
Si024576m.g
Setaria italica
Si024576m.g
I
0.773
GSMUA_Achr2G22560_001
Musa acuminata
GSMUA_Achr2G22560_001
I
0.772
Pavir.J00384
Panicum virgatum
Pavir.J00384
I
0.770
OB01G12600
Oryza brachyantha
OB01G12600
I
0.770
SELMODRAFT_110104
Selaginella moellendorffii
SELMODRAFT_110104
I
0.769
SELMODRAFT_133669
Selaginella moellendorffii
SELMODRAFT_133669
I
0.769
OGLUM01G31260
Oryza glumaepatula
OGLUM01G31260
I
0.767
OPUNC01G02240
Oryza punctata
OPUNC01G02240
I
0.767
LPERR01G02360
Leersia perrieri
LPERR01G02360
I
0.765
GSMUA_Achr3G21100_001
Musa acuminata
GSMUA_Achr3G21100_001
I
0.765
Si004045m.g
Setaria italica
Si004045m.g
I
0.764
TRAES3BF062700040CFD_g
Triticum aestivum
TRAES3BF062700040CFD_g
I
0.762
Pavir.Eb02845
Panicum virgatum
Pavir.Eb02845
I
0.760
Pavir.Ea02092
Panicum virgatum
Pavir.Ea02092
I
0.760
GSMUA_Achr1G05400_001
Musa acuminata
GSMUA_Achr1G05400_001
I
0.760
GSMUA_Achr8G18260_001
Musa acuminata
GSMUA_Achr8G18260_001
I
0.759
MLOC_5512
Hordeum vulgare
MLOC_5512
I
0.758
Pavir.Eb00702
Panicum virgatum
Pavir.Eb00702
I
0.758
Pavir.Ea00549
Panicum virgatum
Pavir.Ea00549
I
0.757
Ciclev10012300m.g
Citrus clementina
Ciclev10012300m.g
I
0.755
Sb03g031860
Sorghum bicolor
Sb03g031860
I
0.753
TRAES3BF062600010CFD_g
Triticum aestivum
TRAES3BF062600010CFD_g
I
0.753
MLOC_7940
Hordeum vulgare
MLOC_7940
I
0.752
Traes_3B_90BE2090B
Triticum aestivum
Traes_3B_90BE2090B
I
0.752
Sb03g006590
Sorghum bicolor
Sb03g006590
I
0.752
gw1.135.126.1
Physcomitrella patens
gw1.135.126.1
I
0.752
BGIOSGA002753
Oryza indica
BGIOSGA002753
I
0.747
BGIOSGA002748
Oryza indica
BGIOSGA002748
I
0.747
Pavir.J23476
Panicum virgatum
Pavir.J23476
I
0.747
BGIOSGA002747
Oryza indica
BGIOSGA002747
I
0.747
Si001909m.g
Setaria italica
Si001909m.g
I
0.747
ORGLA01G0022600
Oryza glaberrima
ORGLA01G0022600
I
0.747
ONIVA01G02990
Oryza nivara
ONIVA01G02990
I
0.747
ORUFI01G02660
Oryza rufipogon
ORUFI01G02660
I
0.747
ORUFI01G02680
Oryza rufipogon
ORUFI01G02680
I
0.747
OS01G0140700
Oryza sativa
OS01G0140700
I
0.747
ONIVA01G02970
Oryza nivara
ONIVA01G02970
I
0.747
OMERI01G02500
Oryza meridionalis
OMERI01G02500
I
0.747
LPERR05G20600
Leersia perrieri
LPERR05G20600
I
0.747
LPERR01G02380
Leersia perrieri
LPERR01G02380
I
0.747
OBART01G02610
Oryza barthii
OBART01G02610
I
0.747
OGLUM01G02850
Oryza glumaepatula
OGLUM01G02850
I
0.747
OMERI01G02480
Oryza meridionalis
OMERI01G02480
I
0.747
OS01G0141000
Oryza sativa
OS01G0141000
I
0.747
ORGLA01G0022400
Oryza glaberrima
ORGLA01G0022400
I
0.747
TCM_019508
Theobroma cacao
TCM_019508
I
0.747
TRIUR3_27886
Triticum urartu
TRIUR3_27886
I
0.747
TRIUR3_24851
Triticum urartu
TRIUR3_24851
I
0.745
TRAES3BF098200010CFD_g
Triticum aestivum
TRAES3BF098200010CFD_g
I
0.740
Traes_3B_DF7E92499
Triticum aestivum
Traes_3B_DF7E92499
I
0.740
TRAES3BF108500010CFD_g
Triticum aestivum
TRAES3BF108500010CFD_g
I
0.740
MLOC_63261
Hordeum vulgare
MLOC_63261
I
0.740
Traes_3B_DF7E924991
Triticum aestivum
Traes_3B_DF7E924991
I
0.740
GRMZM2G159592
Zea mays
GRMZM2G159592
I
0.740
orange1.1g021945m.g
Citrus sinensis
orange1.1g021945m.g
I
0.740
PGSC0003DMG400007458
Solanum tuberosum
PGSC0003DMG400007458
I
0.740
MLOC_56567
Hordeum vulgare
MLOC_56567
I
0.738
Pavir.Ca01165
Panicum virgatum
Pavir.Ca01165
I
0.738
BRADI2G02710
Brachypodium distachyon
BRADI2G02710
I
0.733
MLOC_75135
Hordeum vulgare
MLOC_75135
I
0.733
Eucgr.D00053
Eucalyptus grandis
Eucgr.D00053
I
0.733
BRADI2G02720
Brachypodium distachyon
BRADI2G02720
I
0.733
Pm015500
Prunus mume
Pm015500
I
0.733
e_gw1.63.77.1
Physcomitrella patens
e_gw1.63.77.1
I
0.733
BGIOSGA000982
Oryza indica
BGIOSGA000982
I
0.727
Pavir.Eb00701
Panicum virgatum
Pavir.Eb00701
I
0.725
BRADI2G17610
Brachypodium distachyon
BRADI2G17610
I
0.720
TRAES3BF098300010CFD_g
Triticum aestivum
TRAES3BF098300010CFD_g
I
0.720
Eucgr.L01673
Eucalyptus grandis
Eucgr.L01673
I
0.720
PRUPE_ppa026046mg
Prunus persica
PRUPE_ppa026046mg
I
0.720
MDP0000945267
Malus domestica
MDP0000945267
I
0.713
GSMUA_Achr1G21250_001
Musa acuminata
GSMUA_Achr1G21250_001
I
0.713
GSMUA_AchrUn_randomG06880_001
Musa acuminata
GSMUA_AchrUn_randomG06880_001
I
0.707
gene10330-v1.0-hybrid
Fragaria vesca
gene10330-v1.0-hybrid
N
0.700