Bostr.12659s0398 (Boechera stricta)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bostr.12659s0398 T010575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.827 0.827
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.827 0.827
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.827 0.827
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.827 0.827
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.827 0.827
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.827 0.827
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.753 0.753
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.12659s0398.1.p AP2 65 114
Bostr.12659s0398.1.p B3 193 304

Links

Other AP2,B3 family TFs
Other Boechera stricta TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.953
Bra011002 Brassica rapa Bra011002 I 0.940
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.933
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.933
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.927
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.927
RAV2 Arabidopsis thaliana AT1G68840 D 0.927
Bra024735 Brassica rapa Bra024735 I 0.926
Bo3g138550 Brassica oleracea Bo3g138550 I 0.920
Bo5g043120 Brassica oleracea Bo5g043120 I 0.913
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.913
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.913
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.880
Bra038346 Brassica rapa Bra038346 I 0.880
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.880
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.872
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.867
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.867
Bo2g061320 Brassica oleracea Bo2g061320 I 0.867
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.860
29738.m001050 Ricinus communis 29738.m001050 I 0.860
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.860
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.860
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.853
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.853
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.853
Ca_24123 Cicer arietinum Ca_24123 I 0.853
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.853
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.853
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.847
mgf019592m Mimulus guttatus mgf019592m I 0.847
MDP0000128924 Malus domestica MDP0000128924 I 0.840
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.840
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.840
TCM_011862 Theobroma cacao TCM_011862 I 0.840
Pm029015 Prunus mume Pm029015 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
MDP0000939633 Malus domestica MDP0000939633 I 0.840
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.840
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.840
Bo5g015210 Brassica oleracea Bo5g015210 I 0.840
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.840
Bra019821 Brassica rapa Bra019821 I 0.840
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.839
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.833
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.833
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.833
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.833
Bra026917 Brassica rapa Bra026917 I 0.833
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.833
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.833
Ca_08436 Cicer arietinum Ca_08436 I 0.833
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.827
PK15652.1 Cannabis sativa PK15652.1 I 0.827
RAV1 Arabidopsis thaliana AT1G13260 D 0.827
Cla020675 Citrullus lanatus Cla020675 I 0.827
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.827
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.820
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.820
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.813
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.813
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.813
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.795
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.795
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.793
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.792
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.787
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.787
Cla000872 Citrullus lanatus Cla000872 I 0.785
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.785
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.780
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.780
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.780
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.780
Si024576m.g Setaria italica Si024576m.g I 0.773
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.773
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.773
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.773
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.772
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.769
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.769
Bo2g138650 Brassica oleracea Bo2g138650 I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.767
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.767
OS05G0549800 Oryza sativa OS05G0549800 I 0.767
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
OB01G12600 Oryza brachyantha OB01G12600 I 0.757
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.757
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.755
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
Bra026509 Brassica rapa Bra026509 I 0.753
ARF14 Arabidopsis thaliana AT3G25730 D 0.753
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.752
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.750
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.748
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.747
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.747
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.747
Si001909m.g Setaria italica Si001909m.g I 0.747
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.740
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.740
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.740
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.738
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.736
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.735
Pm015500 Prunus mume Pm015500 I 0.733
MDP0000945267 Malus domestica MDP0000945267 I 0.733
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.733
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.733
TCM_019508 Theobroma cacao TCM_019508 I 0.733
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.733
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.732
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.732
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.727
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.727
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.727
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.727
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.727
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.725
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.723
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.720
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.720
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.720
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.720
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.720
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.720
OBART01G02610 Oryza barthii OBART01G02610 I 0.720
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.720
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.720
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.720
OS01G0140700 Oryza sativa OS01G0140700 I 0.720
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.720
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.720
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.720
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.713
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.713
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.713
OS01G0141000 Oryza sativa OS01G0141000 I 0.713
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.713
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.713
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.713
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.713
Bra025159 Brassica rapa Bra025159 I 0.712
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.711
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.705
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.700
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.700
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700