Eucgr.D00053 (Eucalyptus grandis)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Eucgr.D00053 T010588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.727 0.727
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.727 0.727
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.727 0.727
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.727 0.727
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.727 0.727
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.727 0.727
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.D00053.1 AP2 63 112
Eucgr.D00053.1 B3 185 291

Links

Other AP2,B3 family TFs
Other Eucalyptus grandis TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.933
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.820
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.780
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.773
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.773
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.767
Cla020675 Citrullus lanatus Cla020675 I 0.767
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.767
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.767
Ca_24123 Cicer arietinum Ca_24123 I 0.767
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.760
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.760
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.760
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.760
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.758
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.753
Ca_08436 Cicer arietinum Ca_08436 I 0.753
MDP0000939633 Malus domestica MDP0000939633 I 0.753
MDP0000128924 Malus domestica MDP0000128924 I 0.753
RAV2 Arabidopsis thaliana AT1G68840 D 0.753
PK15652.1 Cannabis sativa PK15652.1 I 0.753
TCM_011862 Theobroma cacao TCM_011862 I 0.753
Pm029015 Prunus mume Pm029015 I 0.753
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.753
29738.m001050 Ricinus communis 29738.m001050 I 0.753
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.753
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.753
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.747
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.747
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.747
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.747
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.747
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.747
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.747
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.740
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.740
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.740
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.740
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.740
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.738
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.733
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.733
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
mgf019592m Mimulus guttatus mgf019592m I 0.733
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.733
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.733
Bra011002 Brassica rapa Bra011002 I 0.733
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.733
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.733
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.733
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.732
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.730
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.727
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.727
RAV1 Arabidopsis thaliana AT1G13260 D 0.727
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.727
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.726
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.726
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.725
Bo3g138550 Brassica oleracea Bo3g138550 I 0.720
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.720
Bo5g015210 Brassica oleracea Bo5g015210 I 0.720
Bra026917 Brassica rapa Bra026917 I 0.720
Bra019821 Brassica rapa Bra019821 I 0.720
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.718
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.718
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.718
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.713
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.711
Bra024735 Brassica rapa Bra024735 I 0.711
Cla000872 Citrullus lanatus Cla000872 I 0.711
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.707
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.707
Bra038346 Brassica rapa Bra038346 I 0.707
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.707
Bo5g043120 Brassica oleracea Bo5g043120 I 0.707
ARF14 Arabidopsis thaliana AT3G25730 D 0.707
Si024576m.g Setaria italica Si024576m.g I 0.707
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.707
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.705
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.705
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.705
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.703
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.700
Si001909m.g Setaria italica Si001909m.g I 0.700
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.700
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.700
OS05G0549800 Oryza sativa OS05G0549800 I 0.700