Lus10021707.g (Linum usitatissimum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Lus10021707.g T010604_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.785 0.785
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.785 0.785
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.785 0.785
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.785 0.785
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.785 0.785
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.785 0.785
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021707 AP2 61 110
Lus10021707 B3 184 287

Links

Other AP2,B3 family TFs
Other Linum usitatissimum TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15652.1 Cannabis sativa PK15652.1 I 0.813
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.812
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.807
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.805
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.805
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.805
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.805
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.799
Pm029015 Prunus mume Pm029015 I 0.799
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.799
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.799
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.799
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.799
MDP0000128924 Malus domestica MDP0000128924 I 0.799
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.792
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.792
Ca_24123 Cicer arietinum Ca_24123 I 0.792
TCM_011862 Theobroma cacao TCM_011862 I 0.792
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.792
Cla020675 Citrullus lanatus Cla020675 I 0.792
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.792
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.792
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.792
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.792
MDP0000939633 Malus domestica MDP0000939633 I 0.792
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.792
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.785
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.785
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.785
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.785
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.785
RAV2 Arabidopsis thaliana AT1G68840 D 0.785
RAV1 Arabidopsis thaliana AT1G13260 D 0.785
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.785
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.785
29738.m001050 Ricinus communis 29738.m001050 I 0.785
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.785
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.785
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.785
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.785
Ca_08436 Cicer arietinum Ca_08436 I 0.785
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.785
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.779
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.779
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.779
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.779
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.779
Bra019821 Brassica rapa Bra019821 I 0.779
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.779
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.779
Bo5g015210 Brassica oleracea Bo5g015210 I 0.779
Bra026917 Brassica rapa Bra026917 I 0.779
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.772
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.772
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.772
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.772
Si001909m.g Setaria italica Si001909m.g I 0.772
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.772
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.772
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.772
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.772
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.772
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.772
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.772
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.772
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.765
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.765
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.765
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.765
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.765
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.765
OB01G12600 Oryza brachyantha OB01G12600 I 0.765
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.765
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.765
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.765
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.765
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.765
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.758
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.758
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.758
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.758
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.758
Bra011002 Brassica rapa Bra011002 I 0.758
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.758
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.758
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.758
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.758
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.758
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.754
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.752
OS01G0140700 Oryza sativa OS01G0140700 I 0.752
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.752
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.752
Bo2g138650 Brassica oleracea Bo2g138650 I 0.752
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.752
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.752
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.752
Cla000872 Citrullus lanatus Cla000872 I 0.752
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.752
mgf019592m Mimulus guttatus mgf019592m I 0.752
Bo3g138550 Brassica oleracea Bo3g138550 I 0.752
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.752
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.752
Si024576m.g Setaria italica Si024576m.g I 0.752
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.752
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.752
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.752
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.752
OBART01G02610 Oryza barthii OBART01G02610 I 0.752
OS05G0549800 Oryza sativa OS05G0549800 I 0.752
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.752
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.745
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.745
Bra024735 Brassica rapa Bra024735 I 0.745
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.745
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.745
OBART01G27360 Oryza barthii OBART01G27360 I 0.745
ARF14 Arabidopsis thaliana AT3G25730 D 0.745
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.745
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.745
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.745
Bo2g061320 Brassica oleracea Bo2g061320 I 0.745
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.745
Bo5g043120 Brassica oleracea Bo5g043120 I 0.745
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.745
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.745
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.745
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.745
OS01G0141000 Oryza sativa OS01G0141000 I 0.745
OS01G0693400 Oryza sativa OS01G0693400 I 0.745
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.745
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.745
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.745
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.745
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.745
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.745
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.738
Bra026509 Brassica rapa Bra026509 I 0.738
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.738
Bra038346 Brassica rapa Bra038346 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.738
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.738
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.732
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.732
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.732
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.725
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.725
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.725
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.725
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.725
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.720
F775_20035 Aegilops tauschii F775_20035 N 0.718
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.711
Pm015500 Prunus mume Pm015500 I 0.711
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.711
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.711
MDP0000945267 Malus domestica MDP0000945267 I 0.705
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.705
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.705
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.705
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.700