Carubv10019207m.g (Capsella rubella)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Carubv10019207m.g T010580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.947 0.947
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.887 0.887
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.887 0.887
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.887 0.887
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.887 0.887
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.887 0.887
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.887 0.887
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019207m AP2 59 108
Carubv10019207m B3 184 291

Links

Other AP2,B3 family TFs
Other Capsella rubella TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.953
ARF14 Arabidopsis thaliana AT3G25730 D 0.947
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.927
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.920
Bo2g138650 Brassica oleracea Bo2g138650 I 0.893
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.893
RAV1 Arabidopsis thaliana AT1G13260 D 0.887
Bra026509 Brassica rapa Bra026509 I 0.887
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.880
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.880
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.880
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.873
Bra026917 Brassica rapa Bra026917 I 0.867
Bra019821 Brassica rapa Bra019821 I 0.867
Bo5g015210 Brassica oleracea Bo5g015210 I 0.867
Bra025159 Brassica rapa Bra025159 I 0.864
MDP0000128924 Malus domestica MDP0000128924 I 0.820
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.820
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.820
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.820
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.819
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.813
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.813
Pm029015 Prunus mume Pm029015 I 0.813
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.813
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.807
MDP0000939633 Malus domestica MDP0000939633 I 0.807
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.807
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.807
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.807
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.807
Cla020675 Citrullus lanatus Cla020675 I 0.807
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.807
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.807
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.807
PK15652.1 Cannabis sativa PK15652.1 I 0.807
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.807
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.807
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.805
RAV2 Arabidopsis thaliana AT1G68840 D 0.800
Ca_08436 Cicer arietinum Ca_08436 I 0.800
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.800
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.800
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.800
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.800
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.800
mgf019592m Mimulus guttatus mgf019592m I 0.800
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.800
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.800
Bra011002 Brassica rapa Bra011002 I 0.793
29738.m001050 Ricinus communis 29738.m001050 I 0.793
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.793
Ca_24123 Cicer arietinum Ca_24123 I 0.793
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.793
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.793
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.793
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.793
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.793
TCM_011862 Theobroma cacao TCM_011862 I 0.793
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.793
Cla000872 Citrullus lanatus Cla000872 I 0.792
Bo3g138550 Brassica oleracea Bo3g138550 I 0.787
Bo5g043120 Brassica oleracea Bo5g043120 I 0.785
Bra024735 Brassica rapa Bra024735 I 0.785
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.784
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.780
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.780
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.780
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.773
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.773
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.762
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.760
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.760
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.760
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.760
Bra038346 Brassica rapa Bra038346 I 0.760
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.758
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.758
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.755
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.753
Bo2g061320 Brassica oleracea Bo2g061320 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.753
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
OB01G12600 Oryza brachyantha OB01G12600 I 0.750
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.747
OS05G0549800 Oryza sativa OS05G0549800 I 0.747
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.747
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.745
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.745
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.745
Si004045m.g Setaria italica Si004045m.g I 0.743
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.740
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.740
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.740
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.740
Si024576m.g Setaria italica Si024576m.g I 0.740
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.740
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.740
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.740
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.738
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.738
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.738
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.738
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.738
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.735
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.735
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.735
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.733
TCM_019508 Theobroma cacao TCM_019508 I 0.733
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.733
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.732
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.730
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.727
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.727
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.725
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.720
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.720
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.720
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.720
OS01G0140700 Oryza sativa OS01G0140700 I 0.720
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.720
Si001909m.g Setaria italica Si001909m.g I 0.720
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.720
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.720
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.720
OBART01G02610 Oryza barthii OBART01G02610 I 0.720
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.719
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.713
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.713
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.712
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
MDP0000945267 Malus domestica MDP0000945267 I 0.707
Pm015500 Prunus mume Pm015500 I 0.707
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.703
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.700