Pm015500 (Prunus mume)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pm015500 T010547_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.727 0.727
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.727 0.727
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.727 0.727
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.727 0.727
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.727 0.727
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.727 0.727
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm015500 AP2 20 69
Pm015500 B3 152 256

Links

Other AP2,B3 family TFs
Other Prunus mume TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.953
MDP0000945267 Malus domestica MDP0000945267 I 0.853
MDP0000153589 Malus domestica MDP0000153589 N 0.833
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.820
MDP0000321569 Malus domestica MDP0000321569 N 0.807
MDP0000223137 Malus domestica MDP0000223137 N 0.800
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.773
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.773
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.767
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.767
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.767
Pm029015 Prunus mume Pm029015 I 0.767
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.760
29738.m001050 Ricinus communis 29738.m001050 I 0.760
TCM_019508 Theobroma cacao TCM_019508 I 0.760
Ca_24123 Cicer arietinum Ca_24123 I 0.760
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.760
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.760
TCM_011862 Theobroma cacao TCM_011862 I 0.760
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.760
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.760
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.760
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.753
PK15652.1 Cannabis sativa PK15652.1 I 0.753
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.753
mgf019592m Mimulus guttatus mgf019592m I 0.753
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.753
RAV2 Arabidopsis thaliana AT1G68840 D 0.753
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.753
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.753
MDP0000939633 Malus domestica MDP0000939633 I 0.753
MDP0000128924 Malus domestica MDP0000128924 I 0.753
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.753
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.753
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.752
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.747
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.747
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.747
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.747
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.747
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.747
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.747
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.747
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.747
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.743
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.740
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.740
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.740
Cla000872 Citrullus lanatus Cla000872 I 0.738
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.738
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.735
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
Cla020675 Citrullus lanatus Cla020675 I 0.733
Ca_08436 Cicer arietinum Ca_08436 I 0.733
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.733
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.733
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
Bo3g138550 Brassica oleracea Bo3g138550 I 0.733
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.733
Bra038346 Brassica rapa Bra038346 I 0.733
Bra024735 Brassica rapa Bra024735 I 0.732
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.732
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.727
Bra019821 Brassica rapa Bra019821 I 0.727
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.727
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.727
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.727
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.727
Bo5g015210 Brassica oleracea Bo5g015210 I 0.727
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.727
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.727
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.727
RAV1 Arabidopsis thaliana AT1G13260 D 0.727
Bo2g061320 Brassica oleracea Bo2g061320 I 0.727
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.727
Bo5g043120 Brassica oleracea Bo5g043120 I 0.727
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.727
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.720
OS05G0549800 Oryza sativa OS05G0549800 I 0.720
Bra026917 Brassica rapa Bra026917 I 0.720
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.720
Si024576m.g Setaria italica Si024576m.g I 0.720
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.719
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.719
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.719
OBART01G27360 Oryza barthii OBART01G27360 I 0.719
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.719
OS01G0693400 Oryza sativa OS01G0693400 I 0.719
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.719
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.719
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.714
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.714
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.713
Si001909m.g Setaria italica Si001909m.g I 0.713
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.713
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.713
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.713
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.711
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.711
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.711
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.711
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.711
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.709
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.708
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.707
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.707
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.707
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.707
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.707
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.707
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.707
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.707
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.705
Si004045m.g Setaria italica Si004045m.g I 0.703
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.701
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.700
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.700
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.700
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.700
OS01G0140700 Oryza sativa OS01G0140700 I 0.700
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.700
ARF14 Arabidopsis thaliana AT3G25730 D 0.700
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.700
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.700
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.700
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.700
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.700
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.700
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.700
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.700
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.700
OB01G12600 Oryza brachyantha OB01G12600 I 0.700
OBART01G02610 Oryza barthii OBART01G02610 I 0.700
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.700