EDF3 (Arabidopsis lyrata)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		fgenesh2_kg.5__327__AT3G25730.1 T010435_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.980 0.980
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.886 0.886
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.886 0.886
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.886 0.886
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.886 0.886
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.886 0.886
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.886 0.886
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__327__AT3G25730.1 AP2 56 105
fgenesh2_kg.5__327__AT3G25730.1 B3 180 285

Links

Other AP2,B3 family TFs
Other Arabidopsis lyrata TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF14 Arabidopsis thaliana AT3G25730 D 0.980
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.953
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.946
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.926
Bo2g138650 Brassica oleracea Bo2g138650 I 0.913
Bra026509 Brassica rapa Bra026509 I 0.906
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.893
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.886
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.886
RAV1 Arabidopsis thaliana AT1G13260 D 0.880
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.879
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.872
Bra019821 Brassica rapa Bra019821 I 0.866
Bra026917 Brassica rapa Bra026917 I 0.866
Bo5g015210 Brassica oleracea Bo5g015210 I 0.866
MDP0000128924 Malus domestica MDP0000128924 I 0.826
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.819
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.819
Pm029015 Prunus mume Pm029015 I 0.819
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.819
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.819
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.812
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.812
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.812
Cla020675 Citrullus lanatus Cla020675 I 0.812
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.812
MDP0000939633 Malus domestica MDP0000939633 I 0.807
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.805
mgf019592m Mimulus guttatus mgf019592m I 0.805
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.805
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.805
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.805
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.805
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.799
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.799
TCM_011862 Theobroma cacao TCM_011862 I 0.799
Ca_24123 Cicer arietinum Ca_24123 I 0.799
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.799
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.799
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.799
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.799
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.799
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.799
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.793
PK15652.1 Cannabis sativa PK15652.1 I 0.793
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.792
Ca_08436 Cicer arietinum Ca_08436 I 0.792
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.792
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.792
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.792
RAV2 Arabidopsis thaliana AT1G68840 D 0.792
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.792
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.787
29738.m001050 Ricinus communis 29738.m001050 I 0.787
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.785
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.785
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.785
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.785
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.781
OS01G0693400 Oryza sativa OS01G0693400 I 0.781
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.781
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.781
OBART01G27360 Oryza barthii OBART01G27360 I 0.781
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.781
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.781
Bo3g138550 Brassica oleracea Bo3g138550 I 0.779
Bra011002 Brassica rapa Bra011002 I 0.779
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.779
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
Cla000872 Citrullus lanatus Cla000872 I 0.772
Bra024735 Brassica rapa Bra024735 I 0.772
Bra025159 Brassica rapa Bra025159 I 0.772
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.772
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.772
Bo5g043120 Brassica oleracea Bo5g043120 I 0.772
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.765
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.765
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.765
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.765
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.765
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.765
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.765
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.765
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.765
OS05G0549800 Oryza sativa OS05G0549800 I 0.758
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.758
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.758
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.758
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.758
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.754
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.752
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.752
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.752
Si024576m.g Setaria italica Si024576m.g I 0.752
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.752
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.752
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.752
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.745
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.745
Bo2g061320 Brassica oleracea Bo2g061320 I 0.745
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.745
Bra038346 Brassica rapa Bra038346 I 0.745
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.745
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.745
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.745
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.745
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.745
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.745
OB01G12600 Oryza brachyantha OB01G12600 I 0.745
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.745
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.745
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.745
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.738
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.738
OS01G0141000 Oryza sativa OS01G0141000 I 0.738
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.738
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.738
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.738
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.738
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.738
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.738
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.738
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.738
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.738
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.738
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.736
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
Si001909m.g Setaria italica Si001909m.g I 0.732
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.732
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.732
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.732
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.732
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.732
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.725
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.725
TCM_019508 Theobroma cacao TCM_019508 I 0.725
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.725
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.725
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.719
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.718
OBART01G02610 Oryza barthii OBART01G02610 I 0.718
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.718
OS01G0140700 Oryza sativa OS01G0140700 I 0.718
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.718
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.718
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.718
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.718
MDP0000945267 Malus domestica MDP0000945267 I 0.713
Pm015500 Prunus mume Pm015500 I 0.711
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.705
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.705
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700