Bra011002 (Brassica rapa)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bra011002 T010418_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.813 0.813
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.813 0.813
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.813 0.813
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.813 0.813
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.813 0.813
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.813 0.813
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011002.1-P AP2 65 114
Bra011002.1-P B3 191 297

Links

Other AP2,B3 family TFs
Other Brassica rapa TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.947
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.940
Bo3g138550 Brassica oleracea Bo3g138550 I 0.940
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.940
Bra024735 Brassica rapa Bra024735 I 0.927
Bo5g043120 Brassica oleracea Bo5g043120 I 0.920
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.913
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.907
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.907
RAV2 Arabidopsis thaliana AT1G68840 D 0.907
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.907
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.907
Bra038346 Brassica rapa Bra038346 I 0.880
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.867
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.867
Bo2g061320 Brassica oleracea Bo2g061320 I 0.867
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.867
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.859
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.853
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.853
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.853
mgf019592m Mimulus guttatus mgf019592m I 0.853
29738.m001050 Ricinus communis 29738.m001050 I 0.847
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.840
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.840
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.840
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.840
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.840
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.840
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.833
Ca_08436 Cicer arietinum Ca_08436 I 0.833
Ca_24123 Cicer arietinum Ca_24123 I 0.833
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.833
MDP0000128924 Malus domestica MDP0000128924 I 0.833
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.833
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.827
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.827
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.827
Bo5g015210 Brassica oleracea Bo5g015210 I 0.827
Bra019821 Brassica rapa Bra019821 I 0.827
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.827
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.820
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.820
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.820
MDP0000939633 Malus domestica MDP0000939633 I 0.820
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.820
TCM_011862 Theobroma cacao TCM_011862 I 0.820
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.820
Bra026917 Brassica rapa Bra026917 I 0.820
Cla020675 Citrullus lanatus Cla020675 I 0.820
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.820
PK15652.1 Cannabis sativa PK15652.1 I 0.820
Pm029015 Prunus mume Pm029015 I 0.820
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.818
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.813
RAV1 Arabidopsis thaliana AT1G13260 D 0.813
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.813
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.813
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.813
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.813
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.807
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.800
Cla000872 Citrullus lanatus Cla000872 I 0.799
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.795
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.793
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.792
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.787
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.787
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.780
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.780
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.779
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.773
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.773
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.773
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.773
Si024576m.g Setaria italica Si024576m.g I 0.773
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.773
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.773
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
ARF14 Arabidopsis thaliana AT3G25730 D 0.767
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
Bo2g138650 Brassica oleracea Bo2g138650 I 0.767
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
OS05G0549800 Oryza sativa OS05G0549800 I 0.767
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.760
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.760
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.760
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.758
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.753
Bra026509 Brassica rapa Bra026509 I 0.753
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.747
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.747
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.740
Pm015500 Prunus mume Pm015500 I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.740
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.740
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.740
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.740
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.740
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.740
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.740
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.740
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.740
OB01G12600 Oryza brachyantha OB01G12600 I 0.740
Si001909m.g Setaria italica Si001909m.g I 0.740
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.740
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.738
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.735
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.733
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.733
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.733
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
Si004045m.g Setaria italica Si004045m.g I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.732
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.727
MDP0000945267 Malus domestica MDP0000945267 I 0.727
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.727
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.727
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.727
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.720
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.720
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.720
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.720
TCM_019508 Theobroma cacao TCM_019508 I 0.720
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.713
OBART01G02610 Oryza barthii OBART01G02610 I 0.713
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.713
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.713
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.713
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.713
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.713
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.713
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.713
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.713
OS01G0140700 Oryza sativa OS01G0140700 I 0.713
OS01G0141000 Oryza sativa OS01G0141000 I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.713
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.713
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.713
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.707
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.705
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.700