Gorai.005G138100 (Gossypium raimondii)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Gorai.005G138100 T010596_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.827 0.827
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.827 0.827
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.827 0.827
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.827 0.827
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.827 0.827
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.827 0.827
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G138100.1 AP2 58 107
Gorai.005G138100.1 B3 189 293

Links

Other AP2,B3 family TFs
Other Gossypium raimondii TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_011862 Theobroma cacao TCM_011862 I 0.933
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.933
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.900
Pm029015 Prunus mume Pm029015 I 0.893
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.893
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.893
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.887
29738.m001050 Ricinus communis 29738.m001050 I 0.880
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.879
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.873
MDP0000939633 Malus domestica MDP0000939633 I 0.873
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.873
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.873
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.872
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.867
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.867
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.867
MDP0000128924 Malus domestica MDP0000128924 I 0.867
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.860
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.860
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.853
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.853
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.847
PK15652.1 Cannabis sativa PK15652.1 I 0.847
Ca_24123 Cicer arietinum Ca_24123 I 0.847
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.840
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.840
Cla020675 Citrullus lanatus Cla020675 I 0.840
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.833
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.833
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.833
Bra019821 Brassica rapa Bra019821 I 0.833
Bra026917 Brassica rapa Bra026917 I 0.833
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.833
Bo5g015210 Brassica oleracea Bo5g015210 I 0.833
RAV2 Arabidopsis thaliana AT1G68840 D 0.833
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.833
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.832
mgf019592m Mimulus guttatus mgf019592m I 0.827
RAV1 Arabidopsis thaliana AT1G13260 D 0.827
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.827
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.827
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.827
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.827
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.820
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.820
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.820
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.820
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.820
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.820
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.820
Ca_08436 Cicer arietinum Ca_08436 I 0.820
Bra024735 Brassica rapa Bra024735 I 0.819
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.819
Bo3g138550 Brassica oleracea Bo3g138550 I 0.813
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.813
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.812
Bo5g043120 Brassica oleracea Bo5g043120 I 0.812
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.807
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.807
Bra011002 Brassica rapa Bra011002 I 0.800
Bra038346 Brassica rapa Bra038346 I 0.800
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.800
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.793
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.792
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.792
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.789
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.789
Cla000872 Citrullus lanatus Cla000872 I 0.785
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.785
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.784
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.782
TCM_019508 Theobroma cacao TCM_019508 I 0.781
ARF14 Arabidopsis thaliana AT3G25730 D 0.780
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.780
Bo2g061320 Brassica oleracea Bo2g061320 I 0.780
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.780
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.780
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.774
Si024576m.g Setaria italica Si024576m.g I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.774
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.774
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
Bra026509 Brassica rapa Bra026509 I 0.773
Bo2g138650 Brassica oleracea Bo2g138650 I 0.773
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.772
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.771
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
OS05G0549800 Oryza sativa OS05G0549800 I 0.765
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.765
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.765
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.762
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.762
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.762
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.760
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.760
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.759
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.758
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.758
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.758
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.758
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.757
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.752
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.752
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.750
Si004045m.g Setaria italica Si004045m.g I 0.750
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.748
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.747
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.747
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.747
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
Pm015500 Prunus mume Pm015500 I 0.740
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.738
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.738
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.738
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.738
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.738
OB01G12600 Oryza brachyantha OB01G12600 I 0.736
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.736
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.733
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.733
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.727
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.727
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.727
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.727
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.727
OS01G0141000 Oryza sativa OS01G0141000 I 0.727
MDP0000945267 Malus domestica MDP0000945267 I 0.727
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.727
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.725
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.723
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.720
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.720
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.720
OBART01G02610 Oryza barthii OBART01G02610 I 0.720
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.720
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.720
Bra025159 Brassica rapa Bra025159 I 0.720
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.720
OS01G0140700 Oryza sativa OS01G0140700 I 0.720
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.720
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.720
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.719
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.718
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.718
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.716
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.714
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.713
Si001909m.g Setaria italica Si001909m.g I 0.713
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.712
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.711
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.711
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.707
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.707
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.707
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.707
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.703
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.700
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.700
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700
MDP0000321569 Malus domestica MDP0000321569 N 0.700