TCM_019508 (Theobroma cacao)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		TCM_019508 T010528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.740 0.740
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.740 0.740
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.740 0.740
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.740 0.740
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.740 0.740
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.740 0.740
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.726 0.726
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY04252 AP2 35 84
EOY04252 B3 166 265

Links

Other AP2,B3 family TFs
Other Theobroma cacao TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.788
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.788
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.781
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.781
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.781
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.781
TCM_011862 Theobroma cacao TCM_011862 I 0.781
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.774
mgf019592m Mimulus guttatus mgf019592m I 0.767
Pm029015 Prunus mume Pm029015 I 0.767
Ca_24123 Cicer arietinum Ca_24123 I 0.767
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.767
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.767
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.767
MDP0000945267 Malus domestica MDP0000945267 I 0.760
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.760
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.760
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.760
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.760
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.760
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.760
Pm015500 Prunus mume Pm015500 I 0.760
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.753
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.753
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.753
Bo5g043120 Brassica oleracea Bo5g043120 I 0.753
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.747
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.747
Bra026917 Brassica rapa Bra026917 I 0.747
PK15652.1 Cannabis sativa PK15652.1 I 0.747
Bo3g138550 Brassica oleracea Bo3g138550 I 0.747
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.747
MDP0000128924 Malus domestica MDP0000128924 I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.745
29738.m001050 Ricinus communis 29738.m001050 I 0.740
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.740
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.740
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.740
Bo5g015210 Brassica oleracea Bo5g015210 I 0.740
MDP0000939633 Malus domestica MDP0000939633 I 0.740
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.740
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
Bra019821 Brassica rapa Bra019821 I 0.740
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.740
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.738
Ca_08436 Cicer arietinum Ca_08436 I 0.733
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.733
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.733
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
MDP0000153589 Malus domestica MDP0000153589 N 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.733
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.733
Bra024735 Brassica rapa Bra024735 I 0.732
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.730
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.727
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.727
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.727
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.727
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.726
OS05G0549800 Oryza sativa OS05G0549800 I 0.726
ARF14 Arabidopsis thaliana AT3G25730 D 0.726
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.726
Cla000872 Citrullus lanatus Cla000872 I 0.725
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.725
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.720
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.720
Bra038346 Brassica rapa Bra038346 I 0.720
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.720
RAV2 Arabidopsis thaliana AT1G68840 D 0.720
Bra011002 Brassica rapa Bra011002 I 0.720
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.720
RAV1 Arabidopsis thaliana AT1G13260 D 0.720
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.719
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.719
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.719
OBART01G27360 Oryza barthii OBART01G27360 I 0.719
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.719
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.719
OS01G0693400 Oryza sativa OS01G0693400 I 0.719
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.719
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.719
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.719
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.719
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.719
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.714
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.713
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
Cla020675 Citrullus lanatus Cla020675 I 0.713
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.713
Bra026509 Brassica rapa Bra026509 I 0.712
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.712
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.711
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.707
Si024576m.g Setaria italica Si024576m.g I 0.705
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.705
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.705
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.705
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.705
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.705
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.705