cassava12324.valid.m1 (Manihot esculenta)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		cassava12324.valid.m1 T010556_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.840 0.840
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.840 0.840
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.840 0.840
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.840 0.840
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.840 0.840
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.840 0.840
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12324.valid.m1 AP2 67 116
cassava12324.valid.m1 B3 200 304

Links

Other AP2,B3 family TFs
Other Manihot esculenta TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001050 Ricinus communis 29738.m001050 I 0.953
TCM_011862 Theobroma cacao TCM_011862 I 0.940
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.940
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.933
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.919
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.907
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.907
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.907
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.907
Pm029015 Prunus mume Pm029015 I 0.907
MDP0000939633 Malus domestica MDP0000939633 I 0.907
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.900
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.900
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.900
MDP0000128924 Malus domestica MDP0000128924 I 0.900
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.893
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.893
PK15652.1 Cannabis sativa PK15652.1 I 0.893
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.893
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.887
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.887
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.887
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.887
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.873
Ca_24123 Cicer arietinum Ca_24123 I 0.873
Cla020675 Citrullus lanatus Cla020675 I 0.867
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.867
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.867
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.867
Bra024735 Brassica rapa Bra024735 I 0.866
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.860
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.860
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.860
Bo5g043120 Brassica oleracea Bo5g043120 I 0.859
Bo3g138550 Brassica oleracea Bo3g138550 I 0.853
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.853
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.853
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.853
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.853
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.853
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.853
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.853
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.853
RAV2 Arabidopsis thaliana AT1G68840 D 0.853
Bo5g015210 Brassica oleracea Bo5g015210 I 0.847
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.847
Bra026917 Brassica rapa Bra026917 I 0.847
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.847
mgf019592m Mimulus guttatus mgf019592m I 0.847
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.847
Bra019821 Brassica rapa Bra019821 I 0.847
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.846
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.840
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.840
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.840
Bra011002 Brassica rapa Bra011002 I 0.840
RAV1 Arabidopsis thaliana AT1G13260 D 0.840
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.839
Bra038346 Brassica rapa Bra038346 I 0.833
Ca_08436 Cicer arietinum Ca_08436 I 0.833
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.833
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.823
Bo2g061320 Brassica oleracea Bo2g061320 I 0.820
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.819
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.818
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.815
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.813
Cla000872 Citrullus lanatus Cla000872 I 0.812
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.812
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.810
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.808
Si024576m.g Setaria italica Si024576m.g I 0.808
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.808
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.807
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.807
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.805
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.800
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.800
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.799
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.799
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.799
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.799
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.796
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.796
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.796
ARF14 Arabidopsis thaliana AT3G25730 D 0.793
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.792
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.792
OS05G0549800 Oryza sativa OS05G0549800 I 0.792
Bo2g138650 Brassica oleracea Bo2g138650 I 0.787
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.785
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.785
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.785
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.785
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.782
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.781
TCM_019508 Theobroma cacao TCM_019508 I 0.781
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.781
OBART01G27360 Oryza barthii OBART01G27360 I 0.781
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.781
OS01G0693400 Oryza sativa OS01G0693400 I 0.781
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.781
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.781
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.781
Bra026509 Brassica rapa Bra026509 I 0.773
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.773
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.771
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.766
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.766
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.765
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.764
OB01G12600 Oryza brachyantha OB01G12600 I 0.764
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.762
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.760
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.758
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.757
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.757
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.755
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.753
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.753
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
Si004045m.g Setaria italica Si004045m.g I 0.750
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.750
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.750
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.748
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.747
Pm015500 Prunus mume Pm015500 I 0.747
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.747
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.747
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.747
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.747
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.747
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.746
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
Bra025159 Brassica rapa Bra025159 I 0.742
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
Si001909m.g Setaria italica Si001909m.g I 0.740
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.738
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.736
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.735
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.733
MDP0000945267 Malus domestica MDP0000945267 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.727
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.727
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.727
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.727
OS01G0141000 Oryza sativa OS01G0141000 I 0.727
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.727
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.727
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.723
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.723
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.720
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.720
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
MDP0000321569 Malus domestica MDP0000321569 N 0.707
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.705
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.700
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.700