Bo2g138650 (Brassica oleracea)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bo2g138650 T010412_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.893 0.893
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.853 0.853
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.853 0.853
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.853 0.853
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.853 0.853
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.853 0.853
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.853 0.853
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g138650.1 AP2 65 114
Bo2g138650.1 B3 195 300

Links

Other AP2,B3 family TFs
Other Brassica oleracea TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra026509 Brassica rapa Bra026509 I 0.967
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.913
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.907
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.893
ARF14 Arabidopsis thaliana AT3G25730 D 0.893
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.873
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.860
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.860
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.860
RAV1 Arabidopsis thaliana AT1G13260 D 0.853
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.847
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.847
Bo5g015210 Brassica oleracea Bo5g015210 I 0.840
Bra026917 Brassica rapa Bra026917 I 0.840
Bra019821 Brassica rapa Bra019821 I 0.840
Pm029015 Prunus mume Pm029015 I 0.807
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.807
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.800
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.800
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.800
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.800
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.800
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.799
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.793
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.793
RAV2 Arabidopsis thaliana AT1G68840 D 0.793
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.793
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.793
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.793
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.793
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.793
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.793
MDP0000128924 Malus domestica MDP0000128924 I 0.793
MDP0000939633 Malus domestica MDP0000939633 I 0.787
TCM_011862 Theobroma cacao TCM_011862 I 0.787
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.787
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.787
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.787
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.787
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.787
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.787
PK15652.1 Cannabis sativa PK15652.1 I 0.780
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.780
mgf019592m Mimulus guttatus mgf019592m I 0.780
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
Cla020675 Citrullus lanatus Cla020675 I 0.780
Ca_08436 Cicer arietinum Ca_08436 I 0.780
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.780
29738.m001050 Ricinus communis 29738.m001050 I 0.780
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.780
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.780
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.780
Bo3g138550 Brassica oleracea Bo3g138550 I 0.780
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.773
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.773
Bra025159 Brassica rapa Bra025159 I 0.773
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.773
Ca_24123 Cicer arietinum Ca_24123 I 0.773
Bo5g043120 Brassica oleracea Bo5g043120 I 0.773
Bra024735 Brassica rapa Bra024735 I 0.773
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.773
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.767
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.767
Bra011002 Brassica rapa Bra011002 I 0.767
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.760
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.760
Cla000872 Citrullus lanatus Cla000872 I 0.753
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.753
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.753
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.747
Bo2g061320 Brassica oleracea Bo2g061320 I 0.747
Bra038346 Brassica rapa Bra038346 I 0.747
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.747
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.740
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.740
OS05G0549800 Oryza sativa OS05G0549800 I 0.740
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.740
OBART01G27360 Oryza barthii OBART01G27360 I 0.740
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.740
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.740
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.740
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.740
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.740
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.740
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.740
OS01G0693400 Oryza sativa OS01G0693400 I 0.740
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.738
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.735
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.733
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.733
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.733
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.733
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.727
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.727
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.727
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.727
Si024576m.g Setaria italica Si024576m.g I 0.727
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.727
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.726
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.720
OB01G12600 Oryza brachyantha OB01G12600 I 0.720
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.720
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.720
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.720
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.720
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.720
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.718
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.718
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.716
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.713
Si001909m.g Setaria italica Si001909m.g I 0.713
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.713
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.713
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.713
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.713
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.713
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.713
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.713
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.713
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.713
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.712
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.711
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.707
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.707
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.707
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.707
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.707
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.707
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.707
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.707
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.707
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.707
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.707
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.707
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.707
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.707
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.707
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.707
OS01G0141000 Oryza sativa OS01G0141000 I 0.707
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.700
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.700
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.700
Si004045m.g Setaria italica Si004045m.g I 0.700
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.700
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.700
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.700
OS01G0140700 Oryza sativa OS01G0140700 I 0.700
OBART01G02610 Oryza barthii OBART01G02610 I 0.700
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.700
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.700