Pavir.J00384 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.J00384 T010632_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.762 0.762
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.762 0.762
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.762 0.762
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.762 0.762
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.762 0.762
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.762 0.762
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00384.1.p AP2 30 79
Pavir.J00384.1.p B3 145 228

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.960
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.913
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.849
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.841
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.841
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.841
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.841
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.841
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.841
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.841
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.841
OS01G0141000 Oryza sativa OS01G0141000 I 0.841
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.841
Si001909m.g Setaria italica Si001909m.g I 0.833
OB01G12600 Oryza brachyantha OB01G12600 I 0.833
OBART01G02610 Oryza barthii OBART01G02610 I 0.833
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.833
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.833
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.833
OS01G0140700 Oryza sativa OS01G0140700 I 0.833
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.833
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.833
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.833
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.833
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.833
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.825
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.817
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.817
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.810
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.810
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.810
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.810
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.810
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.810
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.810
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.810
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.810
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.802
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.794
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.794
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.794
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.794
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.794
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.794
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.794
MDP0000128924 Malus domestica MDP0000128924 I 0.794
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.786
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.786
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.786
Pm029015 Prunus mume Pm029015 I 0.786
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.786
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.786
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.786
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.786
Si004045m.g Setaria italica Si004045m.g I 0.786
Si024576m.g Setaria italica Si024576m.g I 0.786
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.786
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.786
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.786
F775_20035 Aegilops tauschii F775_20035 N 0.778
OS05G0549800 Oryza sativa OS05G0549800 I 0.778
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.778
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.778
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.778
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.778
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.778
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.778
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.778
MDP0000939633 Malus domestica MDP0000939633 I 0.778
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.778
OS01G0693400 Oryza sativa OS01G0693400 I 0.770
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.770
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.770
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.770
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.770
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.770
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.770
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.770
OBART01G27360 Oryza barthii OBART01G27360 I 0.770
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.770
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.770
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.770
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.770
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.770
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.770
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.770
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.770
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.770
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.770
TCM_011862 Theobroma cacao TCM_011862 I 0.762
29738.m001050 Ricinus communis 29738.m001050 I 0.762
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.762
Ca_24123 Cicer arietinum Ca_24123 I 0.762
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.762
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.762
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.762
Cla020675 Citrullus lanatus Cla020675 I 0.762
Bo5g015210 Brassica oleracea Bo5g015210 I 0.762
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.762
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.762
Bra019821 Brassica rapa Bra019821 I 0.762
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.762
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.762
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.762
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.762
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.762
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.762
RAV1 Arabidopsis thaliana AT1G13260 D 0.762
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.762
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.762
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.762
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.762
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.762
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.762
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.754
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.754
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.754
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.754
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.754
Ca_08436 Cicer arietinum Ca_08436 I 0.754
Bra026917 Brassica rapa Bra026917 I 0.754
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.754
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.754
Bra026509 Brassica rapa Bra026509 I 0.754
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.754
ARF14 Arabidopsis thaliana AT3G25730 D 0.754
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.754
RAV2 Arabidopsis thaliana AT1G68840 D 0.754
Si012228m.g Setaria italica Si012228m.g N 0.754
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.746
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.746
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.746
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.746
mgf019592m Mimulus guttatus mgf019592m I 0.738
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.738
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.738
Bo2g138650 Brassica oleracea Bo2g138650 I 0.738
Cla000872 Citrullus lanatus Cla000872 I 0.738
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.730
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.730
Bra038346 Brassica rapa Bra038346 I 0.722
Bo3g138550 Brassica oleracea Bo3g138550 I 0.722
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.722
Bo2g061320 Brassica oleracea Bo2g061320 I 0.722
Bo5g043120 Brassica oleracea Bo5g043120 I 0.722
Bra011002 Brassica rapa Bra011002 I 0.722
Bra024735 Brassica rapa Bra024735 I 0.722
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.722
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.722
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.722
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.722
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.722
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.722
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.722
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.722
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.722
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.714
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.714
Pm015500 Prunus mume Pm015500 I 0.714
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.714
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.706
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.706