Cucsa.283870 (Cucumis sativus)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Cucsa.283870 T010564_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.840 0.840
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.840 0.840
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.840 0.840
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.840 0.840
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.840 0.840
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.840 0.840
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.283870.1 AP2 54 103
Cucsa.283870.1 B3 183 288

Links

Other AP2,B3 family TFs
Other Cucumis sativus TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla020675 Citrullus lanatus Cla020675 I 1.000
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.913
MDP0000128924 Malus domestica MDP0000128924 I 0.900
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.893
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.893
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.893
Pm029015 Prunus mume Pm029015 I 0.893
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.893
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.887
PK15652.1 Cannabis sativa PK15652.1 I 0.887
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.887
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.887
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.887
Ca_24123 Cicer arietinum Ca_24123 I 0.887
29738.m001050 Ricinus communis 29738.m001050 I 0.880
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.880
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.880
MDP0000939633 Malus domestica MDP0000939633 I 0.880
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.880
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.873
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.873
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.867
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.867
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.867
TCM_011862 Theobroma cacao TCM_011862 I 0.867
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.866
mgf019592m Mimulus guttatus mgf019592m I 0.860
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.860
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.860
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.853
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.853
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.853
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.847
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.847
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.847
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.847
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.847
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.847
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.847
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.847
Bo5g015210 Brassica oleracea Bo5g015210 I 0.840
RAV1 Arabidopsis thaliana AT1G13260 D 0.840
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.840
Bra019821 Brassica rapa Bra019821 I 0.840
RAV2 Arabidopsis thaliana AT1G68840 D 0.840
Bra026917 Brassica rapa Bra026917 I 0.840
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.840
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.838
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.833
Ca_08436 Cicer arietinum Ca_08436 I 0.833
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.833
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.833
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.827
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.827
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.827
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.820
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.820
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
Bra011002 Brassica rapa Bra011002 I 0.820
Cla000872 Citrullus lanatus Cla000872 I 0.819
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.812
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.808
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.807
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.807
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.807
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
Bo5g043120 Brassica oleracea Bo5g043120 I 0.800
Bra024735 Brassica rapa Bra024735 I 0.800
Bo3g138550 Brassica oleracea Bo3g138550 I 0.800
Bra038346 Brassica rapa Bra038346 I 0.793
ARF14 Arabidopsis thaliana AT3G25730 D 0.793
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.793
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.792
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.792
Si001909m.g Setaria italica Si001909m.g I 0.787
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.787
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.787
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.787
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.787
Si024576m.g Setaria italica Si024576m.g I 0.787
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.787
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.784
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.780
OB01G12600 Oryza brachyantha OB01G12600 I 0.780
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.780
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.780
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.780
Bo2g061320 Brassica oleracea Bo2g061320 I 0.780
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.780
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.780
Bo2g138650 Brassica oleracea Bo2g138650 I 0.780
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.780
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.779
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.773
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.773
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.773
OS05G0549800 Oryza sativa OS05G0549800 I 0.773
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.773
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.773
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.773
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.773
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.773
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.773
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.773
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.769
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.767
Bra026509 Brassica rapa Bra026509 I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.767
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.767
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.767
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.767
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.767
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.767
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.767
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.767
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.765
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.765
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.760
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.760
Si004045m.g Setaria italica Si004045m.g I 0.753
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.753
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.753
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.753
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.753
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.753
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.753
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.747
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.740
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.740
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.740
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
Pm015500 Prunus mume Pm015500 I 0.733
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.733
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.733
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.727
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.727
MDP0000945267 Malus domestica MDP0000945267 I 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.727
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.726
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.720
TCM_019508 Theobroma cacao TCM_019508 I 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.707
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
F775_20035 Aegilops tauschii F775_20035 N 0.700