Thhalv10007983m.g (Eutrema salsugineum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Thhalv10007983m.g T010641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.813 0.813
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.813 0.813
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.813 0.813
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.813 0.813
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.813 0.813
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.813 0.813
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007983m AP2 66 115
Thhalv10007983m B3 199 311

Links

Other AP2,B3 family TFs
Other Eutrema salsugineum TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.953
Bra011002 Brassica rapa Bra011002 I 0.947
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.933
Bra024735 Brassica rapa Bra024735 I 0.926
Bo5g043120 Brassica oleracea Bo5g043120 I 0.926
Bo3g138550 Brassica oleracea Bo3g138550 I 0.920
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.920
RAV2 Arabidopsis thaliana AT1G68840 D 0.913
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.913
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.913
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.900
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.900
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.873
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.873
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.873
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.867
Bra038346 Brassica rapa Bra038346 I 0.867
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.866
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.860
Ca_08436 Cicer arietinum Ca_08436 I 0.860
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.860
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.859
mgf019592m Mimulus guttatus mgf019592m I 0.853
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.853
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.853
Bo2g061320 Brassica oleracea Bo2g061320 I 0.853
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.847
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.847
Ca_24123 Cicer arietinum Ca_24123 I 0.847
29738.m001050 Ricinus communis 29738.m001050 I 0.847
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.847
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.847
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.840
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.840
Pm029015 Prunus mume Pm029015 I 0.840
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
MDP0000939633 Malus domestica MDP0000939633 I 0.840
MDP0000128924 Malus domestica MDP0000128924 I 0.840
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.833
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.833
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.833
TCM_011862 Theobroma cacao TCM_011862 I 0.827
Bra026917 Brassica rapa Bra026917 I 0.827
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.827
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.822
Si024576m.g Setaria italica Si024576m.g I 0.822
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.820
Bo5g015210 Brassica oleracea Bo5g015210 I 0.820
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.820
Bra019821 Brassica rapa Bra019821 I 0.820
Cla020675 Citrullus lanatus Cla020675 I 0.820
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.820
PK15652.1 Cannabis sativa PK15652.1 I 0.820
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.820
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.820
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.820
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.818
RAV1 Arabidopsis thaliana AT1G13260 D 0.813
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.813
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.813
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.812
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.807
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.807
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.805
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.800
Cla000872 Citrullus lanatus Cla000872 I 0.799
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.796
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.793
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.793
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.793
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.793
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.787
OS05G0549800 Oryza sativa OS05G0549800 I 0.787
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.787
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.785
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.785
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.780
Bo2g138650 Brassica oleracea Bo2g138650 I 0.780
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.779
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.779
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
ARF14 Arabidopsis thaliana AT3G25730 D 0.767
Bra026509 Brassica rapa Bra026509 I 0.767
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.767
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.767
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.765
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.760
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.760
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.755
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.755
TCM_019508 Theobroma cacao TCM_019508 I 0.753
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.753
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.753
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.745
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
OB01G12600 Oryza brachyantha OB01G12600 I 0.743
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.743
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.742
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.742
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.740
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.740
Si001909m.g Setaria italica Si001909m.g I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.740
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.740
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.738
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.738
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.738
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.735
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.733
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.733
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.733
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.733
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.733
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.733
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.732
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.732
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.731
Si004045m.g Setaria italica Si004045m.g I 0.730
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.727
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.727
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.727
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.727
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
Bra025159 Brassica rapa Bra025159 I 0.720
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.720
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.718
OBART01G02610 Oryza barthii OBART01G02610 I 0.713
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.713
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.713
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.713
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.713
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.713
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.713
OS01G0140700 Oryza sativa OS01G0140700 I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.713
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.713
MDP0000945267 Malus domestica MDP0000945267 I 0.713
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.712
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.708
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.707
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.707
OS01G0141000 Oryza sativa OS01G0141000 I 0.707
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.707
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.707
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.707
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.707
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.705
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700