ONIVA01G31290 (Oryza nivara)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		ONIVA01G31290 T010481_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.781 0.781
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.781 0.781
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.781 0.781
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.781 0.781
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.781 0.781
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.781 0.781
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA01G31290.1 AP2 80 129
ONIVA01G31290.1 B3 216 321

Links

Other AP2,B3 family TFs
Other Oryza nivara TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 1.000
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 1.000
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 1.000
OBART01G27360 Oryza barthii OBART01G27360 I 1.000
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 1.000
OS01G0693400 Oryza sativa OS01G0693400 I 1.000
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.993
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.973
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.932
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.925
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.911
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.904
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.904
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.890
OS05G0549800 Oryza sativa OS05G0549800 I 0.884
Si004045m.g Setaria italica Si004045m.g I 0.884
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.884
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.884
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.884
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.877
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.870
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.870
Si024576m.g Setaria italica Si024576m.g I 0.870
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.863
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.863
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.863
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.856
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.836
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.815
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.808
Pm029015 Prunus mume Pm029015 I 0.808
MDP0000128924 Malus domestica MDP0000128924 I 0.808
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.808
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.808
Ca_24123 Cicer arietinum Ca_24123 I 0.801
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.801
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.801
PK15652.1 Cannabis sativa PK15652.1 I 0.800
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.795
Ca_08436 Cicer arietinum Ca_08436 I 0.795
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.795
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.795
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.795
29738.m001050 Ricinus communis 29738.m001050 I 0.795
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.795
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.795
mgf019592m Mimulus guttatus mgf019592m I 0.788
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.788
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.788
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.788
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.788
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.788
TCM_011862 Theobroma cacao TCM_011862 I 0.788
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.788
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.788
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.788
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.788
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.788
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.788
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.788
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.788
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.788
MDP0000939633 Malus domestica MDP0000939633 I 0.787
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.781
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.781
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.781
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.781
Bra019821 Brassica rapa Bra019821 I 0.781
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.781
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.781
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.781
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.781
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.781
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.781
Bo5g015210 Brassica oleracea Bo5g015210 I 0.781
Bra026917 Brassica rapa Bra026917 I 0.781
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.781
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.781
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.774
ARF14 Arabidopsis thaliana AT3G25730 D 0.774
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.774
Bo3g138550 Brassica oleracea Bo3g138550 I 0.774
Cla020675 Citrullus lanatus Cla020675 I 0.774
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.774
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.774
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.774
OBART01G02610 Oryza barthii OBART01G02610 I 0.774
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.774
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.774
OB01G12600 Oryza brachyantha OB01G12600 I 0.774
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.774
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.774
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.774
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.774
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.774
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.774
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.774
OS01G0140700 Oryza sativa OS01G0140700 I 0.774
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.774
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.774
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.774
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.772
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.770
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.767
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.767
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.767
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.767
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.767
RAV2 Arabidopsis thaliana AT1G68840 D 0.767
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.767
Bra011002 Brassica rapa Bra011002 I 0.767
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.767
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.767
Bra024735 Brassica rapa Bra024735 I 0.767
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.767
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.767
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.767
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.767
Bo5g043120 Brassica oleracea Bo5g043120 I 0.767
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.765
RAV1 Arabidopsis thaliana AT1G13260 D 0.760
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.760
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.760
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.760
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.760
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.760
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.760
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.760
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.760
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.760
Si001909m.g Setaria italica Si001909m.g I 0.760
Cla000872 Citrullus lanatus Cla000872 I 0.760
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.760
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.760
OS01G0141000 Oryza sativa OS01G0141000 I 0.760
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.753
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.753
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.753
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.747
Bra038346 Brassica rapa Bra038346 I 0.747
Bo2g061320 Brassica oleracea Bo2g061320 I 0.747
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.747
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.747
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.747
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.745
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
Bo2g138650 Brassica oleracea Bo2g138650 I 0.740
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.740
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.740
Bra026509 Brassica rapa Bra026509 I 0.733
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.733
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.733
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.733
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.726
TCM_019508 Theobroma cacao TCM_019508 I 0.719
Pm015500 Prunus mume Pm015500 I 0.719
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.719
F775_20035 Aegilops tauschii F775_20035 N 0.719
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.712
MDP0000945267 Malus domestica MDP0000945267 I 0.712
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700