LPERR05G20600 (Leersia perrieri)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		LPERR05G20600 T010461_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.771 0.771
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.771 0.771
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.771 0.771
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.771 0.771
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.771 0.771
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.771 0.771
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LPERR05G20600.1 AP2 71 120
LPERR05G20600.1 B3 203 318

Links

Other AP2,B3 family TFs
Other Leersia perrieri TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.938
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.938
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.938
OS05G0549800 Oryza sativa OS05G0549800 I 0.931
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.899
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.899
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.882
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.882
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.875
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.872
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.871
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.870
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.870
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.870
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.870
OS01G0693400 Oryza sativa OS01G0693400 I 0.870
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.870
OBART01G27360 Oryza barthii OBART01G27360 I 0.870
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.870
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.864
Si024576m.g Setaria italica Si024576m.g I 0.863
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.863
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.861
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.852
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.852
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.852
Si004045m.g Setaria italica Si004045m.g I 0.838
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.831
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.826
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.812
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.812
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.812
Pm029015 Prunus mume Pm029015 I 0.812
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.812
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.799
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.799
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.792
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.792
Ca_24123 Cicer arietinum Ca_24123 I 0.792
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.792
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
mgf019592m Mimulus guttatus mgf019592m I 0.785
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.785
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.785
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.785
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.782
MDP0000128924 Malus domestica MDP0000128924 I 0.780
PK15652.1 Cannabis sativa PK15652.1 I 0.780
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.778
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.778
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.778
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.778
OS01G0140700 Oryza sativa OS01G0140700 I 0.778
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.778
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.778
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.778
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.778
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.778
OBART01G02610 Oryza barthii OBART01G02610 I 0.778
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.776
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.773
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.772
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.772
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.771
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.771
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.771
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.771
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.771
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.769
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.769
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
29738.m001050 Ricinus communis 29738.m001050 I 0.767
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.767
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.767
Cla020675 Citrullus lanatus Cla020675 I 0.767
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.767
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.765
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.765
ARF14 Arabidopsis thaliana AT3G25730 D 0.764
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.764
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.760
Ca_08436 Cicer arietinum Ca_08436 I 0.760
TCM_011862 Theobroma cacao TCM_011862 I 0.760
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.760
MDP0000939633 Malus domestica MDP0000939633 I 0.760
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.760
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.760
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.760
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.760
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.760
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.758
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.758
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.758
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.758
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.758
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.757
Bo3g138550 Brassica oleracea Bo3g138550 I 0.757
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.757
Si001909m.g Setaria italica Si001909m.g I 0.753
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.750
OB01G12600 Oryza brachyantha OB01G12600 I 0.750
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.747
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
RAV2 Arabidopsis thaliana AT1G68840 D 0.747
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.747
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.747
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.747
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.747
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.747
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.747
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.747
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.743
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.743
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.742
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.742
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
Bra019821 Brassica rapa Bra019821 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.740
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.740
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.740
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.740
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
Bo5g015210 Brassica oleracea Bo5g015210 I 0.740
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.738
Cla000872 Citrullus lanatus Cla000872 I 0.738
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.738
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.733
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
Bra026917 Brassica rapa Bra026917 I 0.733
Bo5g043120 Brassica oleracea Bo5g043120 I 0.732
Bra024735 Brassica rapa Bra024735 I 0.732
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
Bra026509 Brassica rapa Bra026509 I 0.729
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.722
Bo2g061320 Brassica oleracea Bo2g061320 I 0.720
Bra038346 Brassica rapa Bra038346 I 0.720
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.716
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.715
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.714
Bo2g138650 Brassica oleracea Bo2g138650 I 0.713
Pm015500 Prunus mume Pm015500 I 0.713
F775_20035 Aegilops tauschii F775_20035 N 0.707
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
TCM_019508 Theobroma cacao TCM_019508 I 0.705
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700