gw1.135.126.1 (Physcomitrella patens)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		gw1.135.126.1 T010567_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.745 0.745
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.745 0.745
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.745 0.745
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.745 0.745
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.745 0.745
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.745 0.745
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.135.126.1 AP2 5 54
gw1.135.126.1 B3 131 227

Links

Other AP2,B3 family TFs
Other Physcomitrella patens TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.938
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.837
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.837
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.773
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.773
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.773
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.773
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.773
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.773
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.766
TCM_011862 Theobroma cacao TCM_011862 I 0.766
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.766
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.766
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.766
MDP0000128924 Malus domestica MDP0000128924 I 0.766
mgf019592m Mimulus guttatus mgf019592m I 0.766
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.759
Pm029015 Prunus mume Pm029015 I 0.759
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.759
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.759
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.752
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.752
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.752
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.745
Bra026917 Brassica rapa Bra026917 I 0.745
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.745
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.745
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.745
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.745
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.745
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.738
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.738
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.738
Si024576m.g Setaria italica Si024576m.g I 0.738
Bo3g138550 Brassica oleracea Bo3g138550 I 0.738
Bo5g043120 Brassica oleracea Bo5g043120 I 0.738
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.733
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.733
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.733
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.731
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.731
Ca_24123 Cicer arietinum Ca_24123 I 0.731
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.731
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.731
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.731
OS05G0549800 Oryza sativa OS05G0549800 I 0.723
Bra026509 Brassica rapa Bra026509 I 0.723
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.723
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.723
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.723
ARF14 Arabidopsis thaliana AT3G25730 D 0.723
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.720
PK15652.1 Cannabis sativa PK15652.1 I 0.720
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.720
RAV2 Arabidopsis thaliana AT1G68840 D 0.720
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.720
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.716
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.716
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.716
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.716
MDP0000939633 Malus domestica MDP0000939633 I 0.713
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.713
29738.m001050 Ricinus communis 29738.m001050 I 0.713
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.712
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.709
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.709
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.707
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.707
Cla020675 Citrullus lanatus Cla020675 I 0.707
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.707
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.705
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.705
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.702
OBART01G02610 Oryza barthii OBART01G02610 I 0.702
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.702
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.702
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.702
OS01G0140700 Oryza sativa OS01G0140700 I 0.702
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.702
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.702
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.702
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.702
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.702
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.702
Bo5g015210 Brassica oleracea Bo5g015210 I 0.700
Ca_08436 Cicer arietinum Ca_08436 I 0.700
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.700
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.700
Bra019821 Brassica rapa Bra019821 I 0.700
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.700
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.700
RAV1 Arabidopsis thaliana AT1G13260 D 0.700