Bo3g138550 (Brassica oleracea)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Bo3g138550 T010413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.833 0.833
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.833 0.833
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.833 0.833
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.833 0.833
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.833 0.833
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.833 0.833
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g138550.1 AP2 60 109
Bo3g138550.1 B3 185 291

Links

Other AP2,B3 family TFs
Other Brassica oleracea TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra024735 Brassica rapa Bra024735 I 0.973
Bo5g043120 Brassica oleracea Bo5g043120 I 0.966
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.953
Bra011002 Brassica rapa Bra011002 I 0.940
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.920
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.920
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.907
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.893
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.893
RAV2 Arabidopsis thaliana AT1G68840 D 0.887
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.887
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.887
Bra038346 Brassica rapa Bra038346 I 0.873
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.872
mgf019592m Mimulus guttatus mgf019592m I 0.867
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.867
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.867
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.860
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.860
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.860
29738.m001050 Ricinus communis 29738.m001050 I 0.860
Bo2g061320 Brassica oleracea Bo2g061320 I 0.860
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.853
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.853
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.853
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.853
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.847
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.847
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.847
Bo5g015210 Brassica oleracea Bo5g015210 I 0.847
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.847
Bra019821 Brassica rapa Bra019821 I 0.847
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.840
MDP0000939633 Malus domestica MDP0000939633 I 0.840
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.840
Bra026917 Brassica rapa Bra026917 I 0.840
Pm029015 Prunus mume Pm029015 I 0.840
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.840
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.839
TCM_011862 Theobroma cacao TCM_011862 I 0.833
RAV1 Arabidopsis thaliana AT1G13260 D 0.833
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.833
PK15652.1 Cannabis sativa PK15652.1 I 0.833
MDP0000128924 Malus domestica MDP0000128924 I 0.833
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.832
Ca_08436 Cicer arietinum Ca_08436 I 0.827
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.827
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.827
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.827
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.827
Ca_24123 Cicer arietinum Ca_24123 I 0.827
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.820
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.820
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.819
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.813
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.813
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.813
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.807
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.807
Cla020675 Citrullus lanatus Cla020675 I 0.800
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.800
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.800
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.797
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.796
Cla000872 Citrullus lanatus Cla000872 I 0.792
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.789
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.787
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.787
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.787
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.785
Si024576m.g Setaria italica Si024576m.g I 0.781
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.781
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.781
Bo2g138650 Brassica oleracea Bo2g138650 I 0.780
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.779
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.779
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.779
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.776
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.776
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.775
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.774
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.773
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.773
OS05G0549800 Oryza sativa OS05G0549800 I 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
ARF14 Arabidopsis thaliana AT3G25730 D 0.767
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.767
Bra026509 Brassica rapa Bra026509 I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.765
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.765
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.764
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.762
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.762
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.760
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.757
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.757
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.755
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
OB01G12600 Oryza brachyantha OB01G12600 I 0.750
TCM_019508 Theobroma cacao TCM_019508 I 0.747
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.747
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.745
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.742
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.740
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.738
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.738
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.736
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.736
Pm015500 Prunus mume Pm015500 I 0.733
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.732
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.732
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.732
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.732
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.731
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.730
Si004045m.g Setaria italica Si004045m.g I 0.730
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.730
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.727
Bra025159 Brassica rapa Bra025159 I 0.727
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.726
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.723
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.720
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.720
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.720
Si001909m.g Setaria italica Si001909m.g I 0.720
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.720
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.720
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.713
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.713
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.713
MDP0000945267 Malus domestica MDP0000945267 I 0.713
OBART01G02610 Oryza barthii OBART01G02610 I 0.713
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.713
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.713
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.713
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.713
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.713
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.713
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.713
OS01G0141000 Oryza sativa OS01G0141000 I 0.713
OS01G0140700 Oryza sativa OS01G0140700 I 0.713
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.713
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.713
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.705
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.705
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.700
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700