Carubv10020536m.g (Capsella rubella)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Carubv10020536m.g T010581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.867 0.867
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.867 0.867
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.867 0.867
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.867 0.867
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.867 0.867
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.867 0.867
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020536m AP2 68 117
Carubv10020536m B3 194 300

Links

Other AP2,B3 family TFs
Other Capsella rubella TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.987
RAV2 Arabidopsis thaliana AT1G68840 D 0.953
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.947
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.947
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.940
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.920
Bra024735 Brassica rapa Bra024735 I 0.913
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.913
Bo5g043120 Brassica oleracea Bo5g043120 I 0.913
Bo3g138550 Brassica oleracea Bo3g138550 I 0.907
Bra038346 Brassica rapa Bra038346 I 0.907
Bra011002 Brassica rapa Bra011002 I 0.907
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.900
Bo2g061320 Brassica oleracea Bo2g061320 I 0.893
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.887
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.887
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.886
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.880
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.880
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.880
29738.m001050 Ricinus communis 29738.m001050 I 0.880
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.880
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.873
TCM_011862 Theobroma cacao TCM_011862 I 0.873
Pm029015 Prunus mume Pm029015 I 0.873
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.873
MDP0000128924 Malus domestica MDP0000128924 I 0.873
MDP0000939633 Malus domestica MDP0000939633 I 0.873
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.873
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.873
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.873
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.872
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.867
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.867
Bo5g015210 Brassica oleracea Bo5g015210 I 0.867
RAV1 Arabidopsis thaliana AT1G13260 D 0.867
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.867
Bra019821 Brassica rapa Bra019821 I 0.867
Bra026917 Brassica rapa Bra026917 I 0.867
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.867
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.867
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.867
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.866
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.860
Ca_08436 Cicer arietinum Ca_08436 I 0.860
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.859
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.853
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.853
mgf019592m Mimulus guttatus mgf019592m I 0.853
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.853
PK15652.1 Cannabis sativa PK15652.1 I 0.853
Ca_24123 Cicer arietinum Ca_24123 I 0.847
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.833
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.833
Cla020675 Citrullus lanatus Cla020675 I 0.833
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.831
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.827
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.827
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.816
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.813
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.810
Si024576m.g Setaria italica Si024576m.g I 0.801
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.801
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.801
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.800
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.800
Cla000872 Citrullus lanatus Cla000872 I 0.799
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.793
Bo2g138650 Brassica oleracea Bo2g138650 I 0.793
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.793
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.793
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.792
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.792
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.792
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.789
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.789
OS05G0549800 Oryza sativa OS05G0549800 I 0.787
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.785
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.785
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.785
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.785
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.781
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.781
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.781
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.781
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.781
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.781
OS01G0693400 Oryza sativa OS01G0693400 I 0.781
OBART01G27360 Oryza barthii OBART01G27360 I 0.781
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.780
Bra026509 Brassica rapa Bra026509 I 0.780
ARF14 Arabidopsis thaliana AT3G25730 D 0.780
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.779
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.779
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.778
OB01G12600 Oryza brachyantha OB01G12600 I 0.777
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.776
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.776
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.774
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.773
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.773
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.769
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.769
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.767
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.765
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.765
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.764
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.760
Si001909m.g Setaria italica Si001909m.g I 0.760
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.759
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.758
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.757
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.757
Si004045m.g Setaria italica Si004045m.g I 0.757
TCM_019508 Theobroma cacao TCM_019508 I 0.753
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.753
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.753
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.752
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.752
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.747
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
Pm015500 Prunus mume Pm015500 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
Bra025159 Brassica rapa Bra025159 I 0.742
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.740
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.740
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
MDP0000945267 Malus domestica MDP0000945267 I 0.733
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.733
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.731
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.726
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.720
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.720
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.720
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.718
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.713
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.713
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.713
MDP0000153589 Malus domestica MDP0000153589 N 0.707
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707