Eucgr.L01673 (Eucalyptus grandis)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Eucgr.L01673 T010589_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.713 0.713
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.713 0.713
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.713 0.713
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.713 0.713
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.713 0.713
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.L01673.1 AP2 63 112
Eucgr.L01673.1 B3 195 301

Links

Other AP2,B3 family TFs
Other Eucalyptus grandis TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.933
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.807
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.767
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.753
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
Ca_24123 Cicer arietinum Ca_24123 I 0.753
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.747
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.747
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.747
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.747
Cla020675 Citrullus lanatus Cla020675 I 0.740
Ca_08436 Cicer arietinum Ca_08436 I 0.740
RAV2 Arabidopsis thaliana AT1G68840 D 0.740
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.740
MDP0000128924 Malus domestica MDP0000128924 I 0.740
MDP0000939633 Malus domestica MDP0000939633 I 0.740
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.740
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.740
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.740
TCM_011862 Theobroma cacao TCM_011862 I 0.740
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.740
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.740
Pm029015 Prunus mume Pm029015 I 0.740
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.740
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.733
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.733
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.733
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.733
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.733
29738.m001050 Ricinus communis 29738.m001050 I 0.733
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.733
PK15652.1 Cannabis sativa PK15652.1 I 0.733
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.727
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.727
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.727
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.727
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.720
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.720
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.720
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.720
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.720
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.720
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.720
Bra011002 Brassica rapa Bra011002 I 0.720
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.720
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.720
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.720
mgf019592m Mimulus guttatus mgf019592m I 0.720
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.720
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.720
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.720
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.713
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.713
RAV1 Arabidopsis thaliana AT1G13260 D 0.713
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.713
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.707
Bo5g015210 Brassica oleracea Bo5g015210 I 0.707
Bra026917 Brassica rapa Bra026917 I 0.707
Bra019821 Brassica rapa Bra019821 I 0.707
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.707
Bo3g138550 Brassica oleracea Bo3g138550 I 0.707
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.700
Bra038346 Brassica rapa Bra038346 I 0.700
Bo2g061320 Brassica oleracea Bo2g061320 I 0.700
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.700
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.700