Gorai.013G080000 (Gossypium raimondii)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Gorai.013G080000 T010601_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.839 0.839
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.839 0.839
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.839 0.839
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.839 0.839
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.839 0.839
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.839 0.839
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.772 0.772
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G080000.1 AP2 48 97
Gorai.013G080000.1 B3 179 282

Links

Other AP2,B3 family TFs
Other Gossypium raimondii TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.913
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.913
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.906
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.900
TCM_011862 Theobroma cacao TCM_011862 I 0.900
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.900
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.899
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.899
Pm029015 Prunus mume Pm029015 I 0.899
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.893
MDP0000128924 Malus domestica MDP0000128924 I 0.893
Ca_24123 Cicer arietinum Ca_24123 I 0.893
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.893
Cla020675 Citrullus lanatus Cla020675 I 0.887
MDP0000939633 Malus domestica MDP0000939633 I 0.887
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.887
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.886
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.886
29738.m001050 Ricinus communis 29738.m001050 I 0.880
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.880
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.880
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.880
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.879
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.873
PK15652.1 Cannabis sativa PK15652.1 I 0.873
RAV2 Arabidopsis thaliana AT1G68840 D 0.873
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.873
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.873
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.872
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.872
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.872
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.867
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.867
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.866
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.866
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.860
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.860
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.860
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.859
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.859
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.853
Ca_08436 Cicer arietinum Ca_08436 I 0.853
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.852
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.852
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.847
mgf019592m Mimulus guttatus mgf019592m I 0.846
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.844
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.840
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.840
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.840
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.840
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.840
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.840
Bra011002 Brassica rapa Bra011002 I 0.840
Bra024735 Brassica rapa Bra024735 I 0.839
Bo5g043120 Brassica oleracea Bo5g043120 I 0.839
Bo3g138550 Brassica oleracea Bo3g138550 I 0.839
Bra019821 Brassica rapa Bra019821 I 0.833
RAV1 Arabidopsis thaliana AT1G13260 D 0.833
Bo5g015210 Brassica oleracea Bo5g015210 I 0.833
Bra026917 Brassica rapa Bra026917 I 0.827
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.827
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.824
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
Bra038346 Brassica rapa Bra038346 I 0.820
Si024576m.g Setaria italica Si024576m.g I 0.815
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.815
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.815
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.813
Bo2g061320 Brassica oleracea Bo2g061320 I 0.813
Cla000872 Citrullus lanatus Cla000872 I 0.805
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.805
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.805
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.805
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.801
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.799
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.799
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.799
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.799
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.799
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.799
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.794
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.793
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.792
OS05G0549800 Oryza sativa OS05G0549800 I 0.792
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.785
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.785
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.785
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.785
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.784
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.780
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.780
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.779
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.779
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.779
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.778
OB01G12600 Oryza brachyantha OB01G12600 I 0.777
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.774
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.774
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.774
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.774
OBART01G27360 Oryza barthii OBART01G27360 I 0.774
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.774
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.774
OS01G0693400 Oryza sativa OS01G0693400 I 0.774
Si001909m.g Setaria italica Si001909m.g I 0.773
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.773
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.772
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.772
ARF14 Arabidopsis thaliana AT3G25730 D 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.769
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.769
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.769
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.767
Bo2g138650 Brassica oleracea Bo2g138650 I 0.767
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.767
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.767
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.767
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.767
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.767
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.760
TCM_019508 Theobroma cacao TCM_019508 I 0.760
Pm015500 Prunus mume Pm015500 I 0.760
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.759
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.759
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.758
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
Bra026509 Brassica rapa Bra026509 I 0.758
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.758
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.755
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.752
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.752
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.752
OBART01G02610 Oryza barthii OBART01G02610 I 0.752
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.752
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.752
OS01G0140700 Oryza sativa OS01G0140700 I 0.752
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.752
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.750
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.750
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.745
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.745
Si004045m.g Setaria italica Si004045m.g I 0.743
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.743
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.740
MDP0000945267 Malus domestica MDP0000945267 I 0.740
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.740
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.740
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.738
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.732
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.732
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.731
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.723
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.718
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.713
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.712
Bra025159 Brassica rapa Bra025159 I 0.712
MDP0000153589 Malus domestica MDP0000153589 N 0.705
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.705