Cla000872 (Citrullus lanatus)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Cla000872 T010544_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.779 0.779
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.779 0.779
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.779 0.779
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.779 0.779
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.779 0.779
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.779 0.779
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.765 0.765
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla000872 AP2 43 92
Cla000872 B3 168 271

Links

Other AP2,B3 family TFs
Other Citrullus lanatus TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.953
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.839
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.826
mgf019592m Mimulus guttatus mgf019592m I 0.826
Ca_08436 Cicer arietinum Ca_08436 I 0.826
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.820
29738.m001050 Ricinus communis 29738.m001050 I 0.820
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.819
Pm029015 Prunus mume Pm029015 I 0.819
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.819
Cla020675 Citrullus lanatus Cla020675 I 0.819
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.819
MDP0000128924 Malus domestica MDP0000128924 I 0.812
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.812
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.812
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.805
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.805
TCM_011862 Theobroma cacao TCM_011862 I 0.805
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.805
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.805
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.805
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.805
Bra024735 Brassica rapa Bra024735 I 0.799
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.799
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.799
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.799
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.799
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.799
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.799
Bo5g043120 Brassica oleracea Bo5g043120 I 0.799
Bra011002 Brassica rapa Bra011002 I 0.799
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.793
MDP0000939633 Malus domestica MDP0000939633 I 0.793
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.792
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.792
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.792
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.792
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.792
Ca_24123 Cicer arietinum Ca_24123 I 0.792
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.792
Bo3g138550 Brassica oleracea Bo3g138550 I 0.792
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.792
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.787
PK15652.1 Cannabis sativa PK15652.1 I 0.787
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.785
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.785
RAV2 Arabidopsis thaliana AT1G68840 D 0.785
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.785
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.785
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.785
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.785
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.785
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.785
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.785
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.785
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.779
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.779
Bra026917 Brassica rapa Bra026917 I 0.779
RAV1 Arabidopsis thaliana AT1G13260 D 0.773
Bo5g015210 Brassica oleracea Bo5g015210 I 0.772
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.772
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.772
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.772
Bra019821 Brassica rapa Bra019821 I 0.772
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.772
ARF14 Arabidopsis thaliana AT3G25730 D 0.765
Bra038346 Brassica rapa Bra038346 I 0.765
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.758
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.758
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.758
Bo2g138650 Brassica oleracea Bo2g138650 I 0.753
Bo2g061320 Brassica oleracea Bo2g061320 I 0.753
Si004045m.g Setaria italica Si004045m.g I 0.752
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.752
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.752
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.752
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.752
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.745
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.745
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.745
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.745
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
Bra026509 Brassica rapa Bra026509 I 0.738
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.738
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.738
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.738
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.738
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.738
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.738
OB01G12600 Oryza brachyantha OB01G12600 I 0.738
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.738
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.738
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.738
OS05G0549800 Oryza sativa OS05G0549800 I 0.738
Pm015500 Prunus mume Pm015500 I 0.738
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.738
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.738
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.738
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.738
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.732
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.732
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.732
Si001909m.g Setaria italica Si001909m.g I 0.732
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.732
Si024576m.g Setaria italica Si024576m.g I 0.732
MDP0000945267 Malus domestica MDP0000945267 I 0.727
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.725
TCM_019508 Theobroma cacao TCM_019508 I 0.725
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.720
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.718
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.718
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.718
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.718
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.718
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.718
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.718
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.718
OBART01G02610 Oryza barthii OBART01G02610 I 0.718
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.718
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.718
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.718
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.718
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.718
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.718
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.718
OS01G0141000 Oryza sativa OS01G0141000 I 0.718
OS01G0140700 Oryza sativa OS01G0140700 I 0.718
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.718
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.718
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.718
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.718
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.711
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.711
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.711
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.711
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.711
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.711
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.711
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.711
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.705
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.705
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.705