Pavir.Eb00701 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.Eb00701 T010629_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.718 0.718
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.718 0.718
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.718 0.718
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.718 0.718
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.718 0.718
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00701.1.p AP2 51 100
Pavir.Eb00701.1.p B3 166 275

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.859
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.845
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.839
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.839
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.826
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.826
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.826
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.826
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.826
OS01G0141000 Oryza sativa OS01G0141000 I 0.826
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.820
Si001909m.g Setaria italica Si001909m.g I 0.819
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.819
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.819
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.815
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.812
OB01G12600 Oryza brachyantha OB01G12600 I 0.812
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.812
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.810
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.808
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.805
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.803
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.799
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.799
OBART01G02610 Oryza barthii OBART01G02610 I 0.799
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.799
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.799
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.799
OS01G0140700 Oryza sativa OS01G0140700 I 0.799
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.799
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.799
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.799
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.799
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.792
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.792
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.792
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.792
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.792
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.785
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.785
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.773
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.772
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.755
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.752
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.747
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.745
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.745
PK15652.1 Cannabis sativa PK15652.1 I 0.740
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.740
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.738
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.738
MDP0000128924 Malus domestica MDP0000128924 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.736
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.735
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.733
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.733
Cla020675 Citrullus lanatus Cla020675 I 0.733
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.732
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.732
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.732
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.732
F775_20035 Aegilops tauschii F775_20035 N 0.732
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.732
mgf019592m Mimulus guttatus mgf019592m I 0.732
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.732
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.732
OS05G0549800 Oryza sativa OS05G0549800 I 0.732
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.732
Si024576m.g Setaria italica Si024576m.g I 0.732
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.727
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.727
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.725
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.725
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.725
Cla000872 Citrullus lanatus Cla000872 I 0.725
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.725
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.725
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.725
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.725
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.725
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.725
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.725
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.725
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.725
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.725
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.720
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.720
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.720
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.720
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.720
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.718
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.718
Pm029015 Prunus mume Pm029015 I 0.718
Ca_24123 Cicer arietinum Ca_24123 I 0.718
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.718
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.718
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.718
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.718
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.718
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.716
RAV2 Arabidopsis thaliana AT1G68840 D 0.713
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.713
RAV1 Arabidopsis thaliana AT1G13260 D 0.713
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.711
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.711
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.711
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.711
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.711
Bra026917 Brassica rapa Bra026917 I 0.711
Bra038346 Brassica rapa Bra038346 I 0.711
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.711
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.711
Bra024735 Brassica rapa Bra024735 I 0.711
Bra019821 Brassica rapa Bra019821 I 0.711
Bo3g138550 Brassica oleracea Bo3g138550 I 0.711
Bo5g015210 Brassica oleracea Bo5g015210 I 0.711
Bo5g043120 Brassica oleracea Bo5g043120 I 0.711
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.711
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.711
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.711
Si012228m.g Setaria italica Si012228m.g N 0.710
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.707
29738.m001050 Ricinus communis 29738.m001050 I 0.707
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.707
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.707
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.707
MDP0000939633 Malus domestica MDP0000939633 I 0.707
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
Bra011002 Brassica rapa Bra011002 I 0.707
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.705
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.705
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.705
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.705
TCM_011862 Theobroma cacao TCM_011862 I 0.705
Ca_08436 Cicer arietinum Ca_08436 I 0.700
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.700