BRADI2G02710 (Brachypodium distachyon)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		BRADI2G02710 T010429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.736 0.736
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.736 0.736
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.736 0.736
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.736 0.736
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.736 0.736
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.736 0.736
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G02710.1 AP2 69 118
BRADI2G02710.1 B3 199 306

Links

Other AP2,B3 family TFs
Other Brachypodium distachyon TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.859
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.859
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.851
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.851
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.847
Si001909m.g Setaria italica Si001909m.g I 0.847
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.846
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.845
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.840
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.840
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.840
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.840
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.839
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.839
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.832
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.827
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.826
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.823
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.818
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.818
OS01G0140700 Oryza sativa OS01G0140700 I 0.818
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.818
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.818
OBART01G02610 Oryza barthii OBART01G02610 I 0.818
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.818
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.818
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.818
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.816
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.815
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.813
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.813
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.813
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.813
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.813
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.813
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.813
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.813
OS01G0141000 Oryza sativa OS01G0141000 I 0.813
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.812
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.810
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.805
OB01G12600 Oryza brachyantha OB01G12600 I 0.804
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.800
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.799
F775_20035 Aegilops tauschii F775_20035 N 0.787
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.784
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.782
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.781
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.781
OS01G0693400 Oryza sativa OS01G0693400 I 0.781
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.781
OBART01G27360 Oryza barthii OBART01G27360 I 0.781
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.781
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.781
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.773
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.772
Ca_24123 Cicer arietinum Ca_24123 I 0.770
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.770
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.770
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.769
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.767
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.767
PK15652.1 Cannabis sativa PK15652.1 I 0.767
Si024576m.g Setaria italica Si024576m.g I 0.767
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.764
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.764
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.760
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.759
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.757
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.757
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.757
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.757
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.757
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.757
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.757
RAV2 Arabidopsis thaliana AT1G68840 D 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
MDP0000128924 Malus domestica MDP0000128924 I 0.753
Cla020675 Citrullus lanatus Cla020675 I 0.753
Pm029015 Prunus mume Pm029015 I 0.750
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.750
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.750
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.750
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.748
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.747
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.747
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.747
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.745
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.745
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.745
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.743
OS05G0549800 Oryza sativa OS05G0549800 I 0.743
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.743
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.743
mgf019592m Mimulus guttatus mgf019592m I 0.743
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.740
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.740
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.740
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.740
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.740
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.740
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.740
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.738
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.738
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.738
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.738
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.736
ARF14 Arabidopsis thaliana AT3G25730 D 0.736
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.736
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.736
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.736
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.733
MDP0000939633 Malus domestica MDP0000939633 I 0.733
29738.m001050 Ricinus communis 29738.m001050 I 0.733
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.733
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.733
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.733
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.733
Bo5g043120 Brassica oleracea Bo5g043120 I 0.732
Bra024735 Brassica rapa Bra024735 I 0.732
Si004045m.g Setaria italica Si004045m.g I 0.730
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.730
Bo3g138550 Brassica oleracea Bo3g138550 I 0.730
Bra019821 Brassica rapa Bra019821 I 0.727
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.727
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.727
Bo5g015210 Brassica oleracea Bo5g015210 I 0.727
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.727
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.727
RAV1 Arabidopsis thaliana AT1G13260 D 0.727
Ca_08436 Cicer arietinum Ca_08436 I 0.727
TCM_011862 Theobroma cacao TCM_011862 I 0.727
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.725
Si012228m.g Setaria italica Si012228m.g N 0.725
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.723
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.723
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.721
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.721
Bra026917 Brassica rapa Bra026917 I 0.720
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.720
Cla000872 Citrullus lanatus Cla000872 I 0.718
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.716
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.713
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.713
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.713
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.709
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.709
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.707
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
Bra038346 Brassica rapa Bra038346 I 0.707
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.703
Bra026509 Brassica rapa Bra026509 I 0.703