Sb03g006590 (Sorghum bicolor)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Sb03g006590 T010509_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.745 0.745
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.745 0.745
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.745 0.745
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.745 0.745
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.745 0.745
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.745 0.745
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.738 0.738
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g006590.1 AP2 82 131
Sb03g006590.1 B3 197 308

Links

Other AP2,B3 family TFs
Other Sorghum bicolor TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.953
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.953
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.946
Si001909m.g Setaria italica Si001909m.g I 0.919
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.893
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.893
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.893
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.893
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.893
OS01G0141000 Oryza sativa OS01G0141000 I 0.893
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.893
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.893
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.887
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.886
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.879
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.879
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.879
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.879
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.879
OB01G12600 Oryza brachyantha OB01G12600 I 0.879
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.872
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.872
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.859
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.859
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.859
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.856
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.846
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.846
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.841
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.839
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.839
OBART01G02610 Oryza barthii OBART01G02610 I 0.839
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.839
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.839
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.839
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.839
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.839
OS01G0140700 Oryza sativa OS01G0140700 I 0.839
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.838
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.837
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.832
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.832
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.827
MDP0000128924 Malus domestica MDP0000128924 I 0.792
F775_20035 Aegilops tauschii F775_20035 N 0.792
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.789
OBART01G27360 Oryza barthii OBART01G27360 I 0.788
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.788
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.788
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.788
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.788
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.788
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.788
OS01G0693400 Oryza sativa OS01G0693400 I 0.788
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.780
PK15652.1 Cannabis sativa PK15652.1 I 0.780
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.780
mgf019592m Mimulus guttatus mgf019592m I 0.779
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.779
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.779
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.779
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.779
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.779
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.779
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.779
Cla020675 Citrullus lanatus Cla020675 I 0.773
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.773
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.772
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.772
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.772
Ca_24123 Cicer arietinum Ca_24123 I 0.772
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.772
Si024576m.g Setaria italica Si024576m.g I 0.772
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.772
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.767
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.767
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.765
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.765
Pm029015 Prunus mume Pm029015 I 0.765
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.765
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.765
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.765
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.765
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.765
OS05G0549800 Oryza sativa OS05G0549800 I 0.765
RAV2 Arabidopsis thaliana AT1G68840 D 0.765
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.765
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.765
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.765
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.760
MDP0000939633 Malus domestica MDP0000939633 I 0.760
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.758
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.758
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.758
TCM_011862 Theobroma cacao TCM_011862 I 0.758
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.758
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.758
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.758
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.758
29738.m001050 Ricinus communis 29738.m001050 I 0.753
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.752
Bo5g043120 Brassica oleracea Bo5g043120 I 0.752
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.752
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.752
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.752
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.752
Cla000872 Citrullus lanatus Cla000872 I 0.752
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.752
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.752
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.752
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.752
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.752
Bra024735 Brassica rapa Bra024735 I 0.752
Ca_08436 Cicer arietinum Ca_08436 I 0.752
Si004045m.g Setaria italica Si004045m.g I 0.750
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.747
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.747
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.747
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.747
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.745
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.745
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.745
Bo3g138550 Brassica oleracea Bo3g138550 I 0.745
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.740
ARF14 Arabidopsis thaliana AT3G25730 D 0.738
Bo5g015210 Brassica oleracea Bo5g015210 I 0.738
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.738
Bra026917 Brassica rapa Bra026917 I 0.738
Bra019821 Brassica rapa Bra019821 I 0.738
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.738
Bra038346 Brassica rapa Bra038346 I 0.738
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.738
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.733
Bra011002 Brassica rapa Bra011002 I 0.733
Bo2g061320 Brassica oleracea Bo2g061320 I 0.733
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.725
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.725
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.725
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.725
Bo2g138650 Brassica oleracea Bo2g138650 I 0.720
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.718
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.718
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.718
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.718
Bra026509 Brassica rapa Bra026509 I 0.711
Pm015500 Prunus mume Pm015500 I 0.711
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.711
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.711
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.711
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.705
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.700