ORGLA01G0022600 (Oryza glaberrima)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		ORGLA01G0022600 T010488_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.740 0.740
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.740 0.740
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.740 0.740
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.740 0.740
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.740 0.740
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.740 0.740
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0022600.1 AP2 72 121
ORGLA01G0022600.1 B3 187 298

Links

Other AP2,B3 family TFs
Other Oryza glaberrima TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.987
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.987
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.987
OS01G0141000 Oryza sativa OS01G0141000 I 0.987
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.987
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.987
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.947
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.905
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.893
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.893
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.887
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.867
Si001909m.g Setaria italica Si001909m.g I 0.860
OB01G12600 Oryza brachyantha OB01G12600 I 0.860
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.849
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.841
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.840
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.840
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.840
OS01G0140700 Oryza sativa OS01G0140700 I 0.833
OBART01G02610 Oryza barthii OBART01G02610 I 0.833
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.833
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.833
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.833
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.833
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.833
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.833
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.833
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.831
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.827
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.827
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.827
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.827
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.826
F775_20035 Aegilops tauschii F775_20035 N 0.820
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.820
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.813
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.813
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.813
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.813
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.812
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.812
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.803
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.793
Si004045m.g Setaria italica Si004045m.g I 0.787
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.787
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.780
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.780
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.767
PK15652.1 Cannabis sativa PK15652.1 I 0.767
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.753
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.753
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.753
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.753
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.753
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.747
Cla020675 Citrullus lanatus Cla020675 I 0.747
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.747
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.747
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.747
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.747
mgf019592m Mimulus guttatus mgf019592m I 0.747
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.747
MDP0000128924 Malus domestica MDP0000128924 I 0.747
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
OS01G0693400 Oryza sativa OS01G0693400 I 0.747
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.747
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.747
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.747
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.747
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.747
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.747
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.747
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.747
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.747
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.745
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.742
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.742
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.740
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.740
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.740
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.740
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.740
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.740
OS05G0549800 Oryza sativa OS05G0549800 I 0.740
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.740
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.740
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.740
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.740
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.740
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.740
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.738
RAV2 Arabidopsis thaliana AT1G68840 D 0.733
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.733
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.733
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.733
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
Bra026917 Brassica rapa Bra026917 I 0.733
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.733
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.733
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.733
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.733
Pm029015 Prunus mume Pm029015 I 0.733
MDP0000939633 Malus domestica MDP0000939633 I 0.733
Bra019821 Brassica rapa Bra019821 I 0.733
Ca_24123 Cicer arietinum Ca_24123 I 0.733
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.733
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.733
Bo5g015210 Brassica oleracea Bo5g015210 I 0.733
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.727
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.727
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.727
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.727
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.727
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.727
Si024576m.g Setaria italica Si024576m.g I 0.727
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.727
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.727
ARF14 Arabidopsis thaliana AT3G25730 D 0.727
TCM_011862 Theobroma cacao TCM_011862 I 0.727
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.727
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.727
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.727
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.727
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.723
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.720
29738.m001050 Ricinus communis 29738.m001050 I 0.720
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.720
Ca_08436 Cicer arietinum Ca_08436 I 0.720
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.720
Cla000872 Citrullus lanatus Cla000872 I 0.718
Bra024735 Brassica rapa Bra024735 I 0.718
Bo5g043120 Brassica oleracea Bo5g043120 I 0.713
Bra011002 Brassica rapa Bra011002 I 0.713
Bo3g138550 Brassica oleracea Bo3g138550 I 0.713
Bo2g061320 Brassica oleracea Bo2g061320 I 0.713
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.713
Bra038346 Brassica rapa Bra038346 I 0.713
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.713
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.713
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.707
Pm015500 Prunus mume Pm015500 I 0.700
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.700
Bra026509 Brassica rapa Bra026509 I 0.700
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.700