Solyc05g009790.1 (Solanum lycopersicum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Solyc05g009790.1 T010525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.820 0.820
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.820 0.820
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.820 0.820
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.820 0.820
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.820 0.820
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.820 0.820
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g009790.1.1 AP2 71 120
Solyc05g009790.1.1 B3 207 310

Links

Other AP2,B3 family TFs
Other Solanum lycopersicum TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.807
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.847
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.847
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.812
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.820
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.827
ARF14 Arabidopsis thaliana AT3G25730 D 0.800
RAV1 Arabidopsis thaliana AT1G13260 D 0.820
RAV2 Arabidopsis thaliana AT1G68840 D 0.833
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.813
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.820
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.807
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.827
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.789
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.801
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.750
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.767
Bo5g043120 Brassica oleracea Bo5g043120 I 0.819
Bo5g015210 Brassica oleracea Bo5g015210 I 0.813
Bo2g138650 Brassica oleracea Bo2g138650 I 0.780
Bo2g061320 Brassica oleracea Bo2g061320 I 0.800
Bo3g138550 Brassica oleracea Bo3g138550 I 0.807
Bra038346 Brassica rapa Bra038346 I 0.800
Bra011002 Brassica rapa Bra011002 I 0.813
Bra019821 Brassica rapa Bra019821 I 0.813
Bra024735 Brassica rapa Bra024735 I 0.819
Bra025159 Brassica rapa Bra025159 I 0.742
Bra026509 Brassica rapa Bra026509 I 0.767
Bra026917 Brassica rapa Bra026917 I 0.807
PK15652.1 Cannabis sativa PK15652.1 I 0.887
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.833
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.827
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.827
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.840
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.800
Ca_08436 Cicer arietinum Ca_08436 I 0.827
Ca_24123 Cicer arietinum Ca_24123 I 0.840
Cla000872 Citrullus lanatus Cla000872 I 0.799
Cla020675 Citrullus lanatus Cla020675 I 0.860
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.776
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.900
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.900
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.764
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.860
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.807
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.720
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.733
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.833
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.807
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.820
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.813
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.727
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.887
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.840
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.839
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.839
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.867
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.860
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.866
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.873
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.738
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.753
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.720
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.765
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.812
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.789
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.760
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.833
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.785
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.713
MDP0000128924 Malus domestica MDP0000128924 I 0.887
MDP0000153589 Malus domestica MDP0000153589 N 0.700
MDP0000945267 Malus domestica MDP0000945267 I 0.760
MDP0000939633 Malus domestica MDP0000939633 I 0.867
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.907
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.887
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.847
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.840
mgf019592m Mimulus guttatus mgf019592m I 0.867
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.833
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.789
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.772
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.789
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.810
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.785
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.785
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.747
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.712
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.752
OBART01G02610 Oryza barthii OBART01G02610 I 0.733
OBART01G27360 Oryza barthii OBART01G27360 I 0.795
OB01G12600 Oryza brachyantha OB01G12600 I 0.770
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.795
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.793
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.795
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.733
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.785
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.742
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.733
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.753
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.793
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.795
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.753
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.733
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.753
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.785
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.795
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.795
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.787
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.760
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.753
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.795
OS01G0693400 Oryza sativa OS01G0693400 I 0.795
OS05G0549800 Oryza sativa OS05G0549800 I 0.787
OS01G0141000 Oryza sativa OS01G0141000 I 0.753
OS01G0140700 Oryza sativa OS01G0140700 I 0.733
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.746
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.808
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.797
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.787
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.808
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.759
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.747
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.867
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.893
Pm015500 Prunus mume Pm015500 I 0.760
Pm029015 Prunus mume Pm029015 I 0.880
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.753
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.880
29738.m001050 Ricinus communis 29738.m001050 I 0.867
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.880
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.880
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.867
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.769
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.769
Si024576m.g Setaria italica Si024576m.g I 0.808
Si004045m.g Setaria italica Si004045m.g I 0.791
Si001909m.g Setaria italica Si001909m.g I 0.753
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.840
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.795
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.987
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.806
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.765
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.799
TCM_011862 Theobroma cacao TCM_011862 I 0.873
TCM_019508 Theobroma cacao TCM_019508 I 0.774
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.740
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.740
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.740
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.769
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.776
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.740
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.780
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.900
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.773
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.799
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.760
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.805